Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-235 818.9 410 100.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.0e-176 620.5 332 94.9
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 7.6e-151 537.7 332 81.6
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.5e-143 511.9 332 81.9
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.1e-140 503.1 332 76.2
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 4.6e-140 501.9 332 74.4
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.4e-139 500.4 332 74.1
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 2.3e-139 499.6 332 75.0
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 3.9e-139 498.8 332 75.0
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 3.3e-138 495.7 332 74.1
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 4.8e-137 491.9 332 73.8
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.1e-136 490.7 348 71.6
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.4e-136 490.3 332 73.8
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 6.9e-136 488.0 377 66.3
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 9.1e-136 487.6 332 74.1
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 9.1e-136 487.6 333 73.3
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 3.4e-135 485.7 332 72.9
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.9e-135 485.0 332 71.7
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.9e-135 485.0 335 71.9
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 6.5e-134 481.5 332 71.1
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.4e-133 480.3 349 69.6
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.4e-133 480.3 333 72.4
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.2e-133 479.2 333 72.7
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.5e-133 478.4 333 72.4
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 7.2e-133 478.0 332 70.5
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 7.2e-133 478.0 333 72.4
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 7.2e-133 478.0 332 71.4
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.2e-132 477.2 332 70.5
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 2.1e-132 476.5 332 70.8
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 3.6e-132 475.7 332 71.7
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 1.8e-131 473.4 335 71.3
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 4.4e-130 468.8 332 69.9
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.3e-129 467.2 332 69.0
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.8e-129 466.1 332 72.6
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 6.3e-129 464.9 332 71.7
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 6.3e-129 464.9 332 69.9
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 6.3e-129 464.9 332 69.3
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 1.1e-128 464.2 332 70.2
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.4e-128 463.8 332 69.6
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.8e-128 463.4 332 69.0
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 3.1e-128 462.6 333 69.7
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 5.3e-128 461.8 332 68.7
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.1e-128 461.1 326 70.2
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.2e-127 460.7 332 69.0
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.2e-127 460.7 332 69.0
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.5e-127 460.3 348 66.7
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.5e-127 460.3 332 68.7
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.5e-127 460.3 334 68.0
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.5e-127 460.3 332 70.5
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 2.6e-127 459.5 332 69.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 3.5e-127 459.1 334 68.3
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.8e-126 455.7 333 69.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 3.8e-126 455.7 332 67.2
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 5.0e-126 455.3 332 69.6
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 6.5e-126 454.9 332 67.2
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 8.5e-126 454.5 332 67.8
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 8.5e-126 454.5 332 68.4
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.5e-125 453.8 333 69.7
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.9e-125 453.4 332 67.5
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 5.5e-125 451.8 334 67.7
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 9.4e-125 451.1 333 68.2
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.6e-124 450.3 344 65.1
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 8.0e-124 448.0 332 66.3
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.0e-123 447.6 332 67.2
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.0e-123 447.6 373 63.0
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.8e-123 446.8 332 66.9
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 3.0e-123 446.0 332 66.0
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 3.0e-123 446.0 332 66.0
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 3.0e-123 446.0 333 67.6
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 3.0e-123 446.0 358 64.0
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 3.9e-123 445.7 332 67.8
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 3.3e-122 442.6 315 69.8
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 7.4e-122 441.4 332 66.9
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 2.8e-121 439.5 332 67.2
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 8.2e-121 438.0 348 64.4
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.6e-119 433.0 353 63.2
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 3.5e-119 432.6 333 65.8
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 7.7e-119 431.4 333 65.5
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 5.0e-118 428.7 321 66.7
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 4.0e-115 419.1 388 56.7
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 5.7e-114 415.2 317 66.2
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 2.8e-113 412.9 315 65.4
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 2.8e-113 412.9 335 62.7
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 6.3e-113 411.8 316 65.2
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.4e-112 410.6 332 61.7
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.8e-112 410.2 316 64.9
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.4e-112 409.8 315 64.8
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 2.4e-112 409.8 283 71.4
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 7.7e-111 404.8 332 60.8
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-110 404.1 222 94.1
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 1.7e-110 403.7 332 60.8
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 5.5e-109 398.7 283 71.7
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.0e-107 392.9 314 61.1
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.5e-106 390.6 332 61.4
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 7.0e-104 381.7 283 68.6
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.3e-101 372.9 252 72.6
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.8e-100 369.8 201 90.5
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.2e-95 354.4 350 54.0
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.9e-94 349.4 194 89.7
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-93 347.4 332 58.7
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 2.0e-90 337.0 319 53.3
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 4.6e-87 325.9 235 67.7
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.6e-86 322.0 194 84.5
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.8e-83 312.0 200 80.0
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.1e-80 304.7 332 50.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.3e-78 297.7 338 49.1
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 2.8e-76 290.0 204 71.1
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.6e-76 289.7 375 45.9
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.1e-71 273.9 233 61.4
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.5e-69 266.9 196 67.9
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-57 226.9 126 88.9
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.4e-43 181.4 123 75.6
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.1e-43 180.3 105 82.9
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.6e-42 175.6 93 93.5
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-40 170.2 97 87.6
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-34 151.8 80 93.8
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.7e-33 147.9 109 67.0
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.5e-29 134.0 109 67.9
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.5e-26 123.2 82 74.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.8e-25 120.2 86 73.3
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.9e-24 117.9 106 61.3
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.2e-24 116.7 86 69.8
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.4e-22 111.7 86 69.8
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 1.7e-20 104.8 60 80.0
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 6.3e-20 102.8 71 60.6
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.1e-19 102.1 78 64.1
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 5.3e-19 99.8 97 49.5
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.4e-16 91.7 85 61.2
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 7.2e-16 89.4 156 37.2
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.8e-14 84.7 58 74.1
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.8e-14 84.7 58 74.1
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.0e-13 81.3 88 46.6
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 4.4e-13 80.1 48 68.8
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.4e-11 75.1 88 48.9
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 3.2e-08 63.9 46 58.7
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.2e-07 62.0 46 56.5
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.2e-07 62.0 46 56.5


User provided reference genes

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