Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39635 Nelumbo nucifera HOM05D002727 ORTHO05D002856 7.4e-121 437.2 217 100.0
Nn8g39630 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.5e-108 395.6 218 92.2
Nn2g12179 Nelumbo nucifera HOM05D002727 ORTHO05D002856 7.8e-78 294.3 218 70.6
Nn8g40139 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.4e-73 278.9 216 66.2
Nn2g12178 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.9e-72 275.8 189 71.4
Nn8g40140 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.3e-68 262.3 212 63.2
Nn8g40141 Nelumbo nucifera HOM05D002727 ORTHO05D002856 7.3e-68 261.2 211 64.9
Nn8g40185 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.8e-67 259.2 200 65.5
Nn2g12182 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.9e-63 246.5 153 74.5
Dinv43298 Davidia involucrata HOM05D002727 ORTHO05D002856 6.2e-43 178.3 218 45.9
Dinv42803 Davidia involucrata HOM05D002727 ORTHO05D002856 1.1e-42 177.6 212 46.7
Dinv42800 Davidia involucrata HOM05D002727 ORTHO05D002856 3.2e-39 166.0 161 52.8
Dinv43301 Davidia involucrata HOM05D002727 ORTHO05D002856 3.2e-39 166.0 161 52.8
Rhsim01G0019500 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.1e-38 163.3 194 46.9
Rhsim01G0020200 Rhododendron simsii HOM05D002727 ORTHO05D002856 7.9e-38 161.4 196 46.4
MD03G1035100 Malus domestica HOM05D002727 ORTHO05D002856 1.9e-36 156.8 148 53.4
Prupe.1G100500 Prunus persica HOM05D002727 ORTHO05D002856 7.4e-36 154.8 192 45.3
Rhsim01G0018300 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.3e-35 154.1 194 46.9
Aqoxy3G02264 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.6e-35 153.7 178 50.0
Aqoxy4G00886 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.6e-35 153.7 183 49.2
MD03G1107500 Malus domestica HOM05D002727 ORTHO05D002856 9.0e-34 147.9 173 46.2
Actinidia02639 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.7e-32 143.7 170 50.0
GSVIVG01023712001 Vitis vinifera HOM05D002727 ORTHO05D002856 3.8e-32 142.5 209 46.4
Aqoxy4G00561 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.4e-31 140.6 194 45.9
Aqoxy4G00571 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.4e-31 140.6 194 45.9
Rhsim01G0018600 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.4e-31 140.6 151 46.4
MD15G1046300 Malus domestica HOM05D002727 ORTHO05D002856 3.0e-29 132.9 196 42.9
QL02p098200 Quercus lobata HOM05D002727 ORTHO05D002856 3.9e-29 132.5 144 48.6
Rhsim01G0020900 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.5e-28 129.8 195 42.6
Nn6g35116 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.3e-28 129.4 80 87.5
Prupe.1G100600 Prunus persica HOM05D002727 ORTHO05D002856 1.1e-26 124.4 185 39.5
TWI34G1383 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 1.6e-19 100.5 191 38.7
Rhsim01G0017200 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.9e-16 89.7 71 56.3
Rhsim01G0018500 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.9e-16 89.7 71 56.3
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 1.4e-15 87.4 182 35.7
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.4e-15 87.4 147 35.4
Eucgr.G02208 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.9e-15 87.0 148 35.1
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 2.5e-15 86.7 147 35.4
Thecc.09G156200 Theobroma cacao HOM05D013024 ORTHO05D015548 4.2e-15 85.9 156 36.5
Thecc.09G157300 Theobroma cacao HOM05D013024 ORTHO05D015548 5.5e-15 85.5 205 32.2
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 9.4e-15 84.7 203 34.0
Thecc.09G156700 Theobroma cacao HOM05D013024 ORTHO05D015548 1.2e-14 84.3 156 35.9
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.2e-14 84.3 183 35.0
Manes.09G062812 Manihot esculenta HOM05D013024 ORTHO05D015548 2.1e-14 83.6 138 38.4
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 2.7e-14 83.2 183 33.9
CANSAT11G2620 Cannabis sativa HOM05D013024 ORTHO05D015548 7.9e-14 81.6 159 35.2
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.0e-13 81.3 139 36.7
ATR0012G059 Amborella trichopoda HOM05D002727 ORTHO05D002856 1.4e-13 80.9 144 38.2
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 1.8e-13 80.5 182 34.6
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 1.8e-13 80.5 123 38.2
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 2.3e-13 80.1 151 34.4
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 2.3e-13 80.1 183 36.6
Atru.chr11.406 Acer truncatum HOM05D002727 ORTHO05D002856 3.0e-13 79.7 186 34.9
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 3.0e-13 79.7 184 34.2
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 3.0e-13 79.7 148 37.8
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.0e-13 79.7 148 37.8
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 3.0e-13 79.7 183 32.8
Cpa.g.sc199.5 Carica papaya HOM05D013024 ORTHO05D015548 3.9e-13 79.3 149 36.2
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.1e-13 79.0 148 37.2
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 5.1e-13 79.0 148 35.8
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 8.8e-13 78.2 149 33.6
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 8.8e-13 78.2 146 34.9
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 8.8e-13 78.2 146 34.9
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 2.0e-12 77.0 146 34.9
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 2.0e-12 77.0 171 34.5
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 2.6e-12 76.6 135 40.0
FAN14G2593 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-12 76.6 142 35.9
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 2.6e-12 76.6 188 36.2
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 3.3e-12 76.3 136 36.8
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 3.3e-12 76.3 133 35.3
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 4.4e-12 75.9 186 34.4
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 4.4e-12 75.9 183 34.4
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 4.4e-12 75.9 135 35.6
Aqoxy1G00996 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 5.7e-12 75.5 135 37.8
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 5.7e-12 75.5 183 33.9
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 5.7e-12 75.5 135 37.8
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 9.7e-12 74.7 179 29.6
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 9.7e-12 74.7 118 37.3
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 9.7e-12 74.7 146 34.9
PSO017G4651 Papaver somniferum HOM05D002727 ORTHO05D002856 1.3e-11 74.3 142 33.8
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 1.3e-11 74.3 186 32.3
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 1.7e-11 73.9 149 34.9
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 2.2e-11 73.6 213 30.0
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.2e-11 73.6 148 35.8
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 2.8e-11 73.2 162 31.5
Psat2g129760 Pisum sativum HOM05D002727 ORTHO05D002856 2.8e-11 73.2 132 34.1
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 2.8e-11 73.2 181 32.6
TPR.G24442 Trifolium pratense HOM05D002727 ORTHO05D002856 2.8e-11 73.2 132 34.8
Haze_14633 Corylus avellana HOM05D013024 ORTHO05D015548 3.7e-11 72.8 141 36.9
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 3.7e-11 72.8 132 33.3
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 4.8e-11 72.4 146 32.9
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 4.8e-11 72.4 183 34.4
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 4.8e-11 72.4 103 41.7
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 4.8e-11 72.4 183 30.1
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 6.3e-11 72.0 162 31.5
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 6.3e-11 72.0 146 35.6
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 6.3e-11 72.0 133 33.8
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 1.1e-10 71.2 183 33.9
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.1e-10 71.2 183 33.3
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 1.4e-10 70.9 183 33.9
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 1.4e-10 70.9 184 36.4
FvH4_6g20740 Fragaria vesca HOM05D002727 ORTHO05D002856 1.4e-10 70.9 127 37.0
Cpa.g.sc65.122 Carica papaya HOM05D002727 ORTHO05D002856 1.8e-10 70.5 131 35.1
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.8e-10 70.5 195 33.3
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.8e-10 70.5 195 33.3
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 1.8e-10 70.5 183 34.4
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 2.4e-10 70.1 133 32.3
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.4e-10 70.1 142 33.8
CANSAT21G1445 Cannabis sativa HOM05D013024 ORTHO05D015548 3.1e-10 69.7 104 40.4
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 3.1e-10 69.7 175 32.6
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 4.1e-10 69.3 185 31.9
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 5.3e-10 68.9 167 28.7
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 5.3e-10 68.9 184 29.9
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 5.3e-10 68.9 134 34.3
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 6.9e-10 68.6 182 31.3
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 6.9e-10 68.6 146 32.9
FAN02G0051 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.1e-10 68.2 142 33.8
FAN05G5197 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.1e-10 68.2 141 32.6
FAN05G5380 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.1e-10 68.2 141 32.6
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 9.1e-10 68.2 132 32.6
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 9.1e-10 68.2 179 32.4
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 1.2e-09 67.8 180 31.1
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 1.2e-09 67.8 179 33.0
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 1.2e-09 67.8 134 35.1
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 1.2e-09 67.8 134 35.1
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 1.2e-09 67.8 134 35.1
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 1.5e-09 67.4 173 34.1
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 2.6e-09 66.6 180 31.1
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 2.6e-09 66.6 180 31.1
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-09 66.6 144 33.3
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-09 66.6 134 33.6
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-09 66.6 129 36.4
FAN06G1995 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.4e-09 66.2 127 36.2
Medtr4g084160 Medicago truncatula HOM05D002727 ORTHO05D002856 3.4e-09 66.2 171 32.2
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 3.4e-09 66.2 149 33.6
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 4.5e-09 65.9 173 28.9
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 4.5e-09 65.9 139 32.4
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 5.9e-09 65.5 180 31.1
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 7.7e-09 65.1 184 31.5
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 7.7e-09 65.1 183 31.7
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 1.0e-08 64.7 180 31.1
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 1.0e-08 64.7 172 32.6
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-08 64.3 185 33.0
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 1.3e-08 64.3 188 30.9
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.7e-08 63.9 184 33.2
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.7e-08 63.9 184 31.0
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 2.2e-08 63.5 184 32.6
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 2.2e-08 63.5 145 31.0
unitig_26.g9074 Utricularia gibba HOM05D002727 ORTHO05D002856 2.2e-08 63.5 175 32.6
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 2.2e-08 63.5 101 41.6
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 2.9e-08 63.2 127 37.8
Thecc.09G156100 Theobroma cacao HOM05D013024 ORTHO05D015548 2.9e-08 63.2 172 31.4
Thecc.09G156800 Theobroma cacao HOM05D013024 ORTHO05D015548 2.9e-08 63.2 172 31.4
Thecc.09G157200 Theobroma cacao HOM05D013024 ORTHO05D015548 3.8e-08 62.8 153 30.7
unitig_27.g25263 Utricularia gibba HOM05D002727 ORTHO05D002856 3.8e-08 62.8 157 32.5
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 5.0e-08 62.4 145 32.4
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 6.5e-08 62.0 134 31.3
Thecc.09G156600 Theobroma cacao HOM05D013024 ORTHO05D015548 8.5e-08 61.6 172 32.6
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 8.5e-08 61.6 140 31.4
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 1.4e-07 60.8 134 32.1
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 1.4e-07 60.8 135 29.6
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 4.2e-07 59.3 142 33.1
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 5.5e-07 58.9 119 34.5
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 5.5e-07 58.9 103 34.0
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 5.5e-07 58.9 183 30.1
CAN.G185.21 Capsicum annuum HOM05D002727 ORTHO05D002856 9.4e-07 58.2 130 31.5
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 1.2e-06 57.8 186 32.8
FAN06G1300 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.6e-06 56.2 115 31.3
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 4.7e-06 55.8 141 31.2
Cfa008587 Carpinus fangiana HOM05D002727 ORTHO05D002856 4.7e-06 55.8 127 32.3
FAN10G0312 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.1e-06 55.5 117 31.6
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 6.1e-06 55.5 116 32.8


User provided reference genes

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