Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39570 Nelumbo nucifera HOM05D006579 ORTHO05D007783 2.8e-138 495.4 266 100.0
TAR362G0572 Trochodendron aralioides HOM05D006579 ORTHO05D007783 1.0e-108 397.1 270 80.7
MBI15_g35678_MAGBIO Magnolia biondii HOM05D006579 ORTHO05D007783 8.8e-108 394.0 268 82.1
Thecc.01G328000 Theobroma cacao HOM05D006579 ORTHO05D007783 2.6e-107 392.5 269 78.4
Gohir.D11G111000 Gossypium hirsutum HOM05D006579 ORTHO05D007783 3.4e-107 392.1 267 79.4
Gorai.007G118800 Gossypium raimondii HOM05D006579 ORTHO05D007783 1.3e-106 390.2 267 79.0
ATR0796G267 Amborella trichopoda HOM05D006579 ORTHO05D007783 1.1e-105 387.1 264 78.4
GSVIVG01028219001 Vitis vinifera HOM05D006579 ORTHO05D007783 1.1e-105 387.1 272 78.3
Gohir.A11G106100 Gossypium hirsutum HOM05D006579 ORTHO05D007783 9.2e-105 384.0 267 78.7
Duzib138G1509 Durio zibethinus HOM05D006579 ORTHO05D007783 1.2e-104 383.6 269 76.6
Manes.14G164500 Manihot esculenta HOM05D006579 ORTHO05D007783 5.9e-104 381.3 273 77.7
Potri.014G110200 Populus trichocarpa HOM05D006579 ORTHO05D007783 1.9e-102 376.3 270 77.4
COL.COLO4_23096 Corchorus olitorius HOM05D006579 ORTHO05D007783 1.2e-101 373.6 269 75.8
Ciclev10021552m.g Citrus clementina HOM05D006579 ORTHO05D007783 8.0e-101 370.9 247 81.0
Dinv33186 Davidia involucrata HOM05D006579 ORTHO05D007783 8.9e-100 367.5 283 74.6
PSO210G5405 Papaver somniferum HOM05D006579 ORTHO05D007783 1.2e-99 367.1 243 78.2
Glyma.02G006400 Glycine max HOM05D006579 ORTHO05D007783 7.5e-99 364.4 281 73.3
Hund07814 Selenicereus undatus HOM05D006579 ORTHO05D007783 7.5e-99 364.4 266 75.2
TWI23G0058 Tripterygium wilfordii HOM05D006579 ORTHO05D007783 1.3e-98 363.6 272 74.6
PSO761G0510 Papaver somniferum HOM05D006579 ORTHO05D007783 1.7e-98 363.2 242 76.9
arahy.Tifrunner.gnm1.ann1.3317JQ Arachis hypogaea HOM05D006579 ORTHO05D007783 4.9e-98 361.7 250 78.8
Cfa004929 Carpinus fangiana HOM05D006579 ORTHO05D007783 4.9e-98 361.7 295 69.8
Aqoxy2G02395 Aquilegia oxysepala HOM05D006579 ORTHO05D007783 6.4e-98 361.3 286 71.7
Cpa.g.sc57.48 Carica papaya HOM05D006579 ORTHO05D007783 6.4e-98 361.3 271 72.7
arahy.Tifrunner.gnm1.ann1.E1WP71 Arachis hypogaea HOM05D006579 ORTHO05D007783 1.1e-97 360.5 249 78.7
Sabra14G0081200 Salix brachista HOM05D006579 ORTHO05D007783 1.8e-97 359.8 301 69.8
THA.LOC104825921 Tarenaya hassleriana HOM05D006579 ORTHO05D007783 1.8e-97 359.8 273 71.8
Cc06_g22680 Coffea canephora HOM05D006579 ORTHO05D007783 2.0e-96 356.3 282 71.3
Glyma.10G140000 Glycine max HOM05D006579 ORTHO05D007783 2.0e-96 356.3 250 78.0
VMungo0720G0607 Vigna mungo HOM05D006579 ORTHO05D007783 5.9e-96 354.8 250 77.2
Lj5g0006855 Lotus japonicus HOM05D006579 ORTHO05D007783 7.8e-96 354.4 283 71.7
PGR042G1939 Punica granatum HOM05D006579 ORTHO05D007783 7.8e-96 354.4 282 69.1
CARHR001640 Cardamine hirsuta HOM05D006579 ORTHO05D007783 1.7e-95 353.2 275 71.6
Carub.0001s0137 Capsella rubella HOM05D006579 ORTHO05D007783 3.0e-95 352.4 275 72.4
SalBow3G0048 Salvia bowleyana HOM05D006579 ORTHO05D007783 8.6e-95 350.9 276 71.4
Atru.chr5.832 Acer truncatum HOM05D006579 ORTHO05D007783 4.3e-94 348.6 246 75.2
EL10Ac9g20927 Beta vulgaris HOM05D006579 ORTHO05D007783 4.3e-94 348.6 264 73.1
HPP92_026046 Vanilla planifolia HOM05D006579 ORTHO05D007783 4.3e-94 348.6 268 73.1
Phvul.007G207700 Phaseolus vulgaris HOM05D006579 ORTHO05D007783 7.3e-94 347.8 280 70.7
Lalb_Chr06g0167181 Lupinus albus HOM05D006579 ORTHO05D007783 1.2e-93 347.1 281 69.4
CANSAT25G2874 Cannabis sativa HOM05D006579 ORTHO05D007783 3.6e-93 345.5 289 68.9
Ca_10226_v3 Cicer arietinum L. HOM05D006579 ORTHO05D007783 3.6e-93 345.5 281 69.0
MELO3C005183.2 Cucumis melo HOM05D006579 ORTHO05D007783 8.0e-93 344.4 301 64.1
DCAR_018237 Daucus carota HOM05D006579 ORTHO05D007783 1.1e-92 344.0 277 71.1
Nitab4.5_0002103g0080 Nicotiana tabacum HOM05D006579 ORTHO05D007783 1.4e-92 343.6 290 67.2
Oeu038082.1 Olea europaea HOM05D006579 ORTHO05D007783 5.2e-92 341.7 281 68.7
Lalb_Chr21g0309921 Lupinus albus HOM05D006579 ORTHO05D007783 6.8e-92 341.3 280 69.6
QL09p037462 Quercus lobata HOM05D006579 ORTHO05D007783 6.8e-92 341.3 269 71.0
CiPaw.07G127500 Carya illinoinensis HOM05D006579 ORTHO05D007783 8.9e-92 340.9 300 66.3
Nitab4.5_0001628g0050 Nicotiana tabacum HOM05D006579 ORTHO05D007783 1.2e-91 340.5 290 66.2
Eucgr.A00989 Eucalyptus grandis HOM05D006579 ORTHO05D007783 1.5e-91 340.1 281 68.0
MD17G1285900 Malus domestica HOM05D006579 ORTHO05D007783 2.6e-91 339.3 307 65.5
TPR.G3075 Trifolium pratense HOM05D006579 ORTHO05D007783 7.5e-91 337.8 284 69.0
Aa31LG1G10170 Aethionema arabicum HOM05D006579 ORTHO05D007783 1.3e-90 337.0 270 69.3
Psat6g157680 Pisum sativum HOM05D006579 ORTHO05D007783 1.3e-90 337.0 283 68.2
Prupe.3G000500 Prunus persica HOM05D006579 ORTHO05D007783 1.3e-90 337.0 302 65.6
Sc12g0008270 Simmondsia chinensis HOM05D006579 ORTHO05D007783 2.2e-90 336.3 266 71.8
AL1G11660 Arabidopsis lyrata HOM05D006579 ORTHO05D007783 3.7e-90 335.5 275 70.2
Sp1g01410 Schrenkiella parvula HOM05D006579 ORTHO05D007783 4.9e-90 335.1 274 69.0
Thhalv10008452m.g Eutrema salsugineum HOM05D006579 ORTHO05D007783 6.4e-90 334.7 273 69.6
ClCG01G007260 Citrullus lanatus HOM05D006579 ORTHO05D007783 8.3e-90 334.3 302 62.9
Solyc01g068580.4 Solanum lycopersicum HOM05D006579 ORTHO05D007783 1.1e-89 334.0 289 65.7
HanXRQChr01g0017841 Helianthus annuus HOM05D006579 ORTHO05D007783 1.4e-89 333.6 288 65.6
BcaC05g24612 Brassica carinata HOM05D006579 ORTHO05D007783 2.4e-89 332.8 273 69.2
C05p01100 Brassica napus HOM05D006579 ORTHO05D007783 2.4e-89 332.8 273 69.2
CsaV3_5G018690 Cucumis sativus L. HOM05D006579 ORTHO05D007783 3.2e-89 332.4 302 62.3
CAN.G179.22 Capsicum annuum HOM05D006579 ORTHO05D007783 4.1e-89 332.0 286 66.4
Sopen01g030530 Solanum pennellii HOM05D006579 ORTHO05D007783 5.4e-89 331.6 289 65.4
AUR62037602 Chenopodium quinoa HOM05D006579 ORTHO05D007783 7.0e-89 331.3 264 69.3
BolC5t28891H Brassica oleracea HOM05D006579 ORTHO05D007783 9.2e-89 330.9 273 68.9
ECA248G0873 Erigeron canadensis HOM05D006579 ORTHO05D007783 9.2e-89 330.9 288 65.3
BraA10t42384Z Brassica rapa HOM05D006579 ORTHO05D007783 1.6e-88 330.1 273 68.1
AT1G02330 Arabidopsis thaliana HOM05D006579 ORTHO05D007783 1.3e-87 327.0 277 68.6
Medtr1g085470 Medicago truncatula HOM05D006579 ORTHO05D007783 6.6e-87 324.7 282 67.4
CSS0004948 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 3.3e-86 322.4 287 65.9
Sed0009510 Sechium edule HOM05D006579 ORTHO05D007783 1.2e-85 320.5 294 62.6
FAN28G1483 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.4e-84 317.0 269 66.5
FvH4_1g26040 Fragaria vesca HOM05D006579 ORTHO05D007783 3.1e-84 315.8 273 65.2
FAN19G0998 Fragaria x ananassa HOM05D006579 ORTHO05D007783 3.1e-84 315.8 273 65.2
RcHm_v2.0_Chr3g0485501 Rosa chinensis HOM05D006579 ORTHO05D007783 5.2e-84 315.1 297 61.3
Peaxi162Scf00309g00059 Petunia axillaris HOM05D006579 ORTHO05D007783 1.2e-83 313.9 213 77.9
Actinidia21333 Actinidia chinensis HOM05D006579 ORTHO05D007783 2.6e-83 312.8 257 70.0
Lsat_1_v5_gn_1_78561 Lactuca sativa HOM05D006579 ORTHO05D007783 5.8e-83 311.6 273 64.5
FAN23G1885 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.7e-82 310.1 273 65.2
FAN23G2819 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.7e-82 310.1 273 65.2
Migut.D00005 Erythranthe guttata HOM05D006579 ORTHO05D007783 1.4e-81 307.0 282 63.5
PGSC0003DMG400000840 Solanum tuberosum HOM05D006579 ORTHO05D007783 1.4e-81 307.0 325 57.2
Os03g0374100 Oryza sativa ssp. japonica HOM05D006579 ORTHO05D007783 3.2e-81 305.8 279 62.4
SGA_v2.0_scaffold417G51243 Striga asiatica HOM05D006579 ORTHO05D007783 1.6e-80 303.5 307 60.9
FAN26G1368 Fragaria x ananassa HOM05D006579 ORTHO05D007783 2.7e-80 302.8 298 59.7
MSTRG.18055 Avicennia marina HOM05D006579 ORTHO05D007783 3.0e-79 299.3 278 63.3
Pp3c6_17910 Physcomitrium patens HOM05D006579 ORTHO05D007783 1.1e-78 297.4 267 64.4
Hma1.2p1_1372F.1_g278650 Hydrangea macrophylla HOM05D006579 ORTHO05D007783 4.3e-78 295.4 181 85.6
Mapoly0012s0210 Marchantia polymorpha HOM05D006579 ORTHO05D007783 4.3e-78 295.4 275 65.1
Zm00001eb018120 Zea mays HOM05D006579 ORTHO05D007783 5.8e-75 285.0 271 60.9
Ah.01g015750 Amaranthus hybridus HOM05D006579 ORTHO05D007783 8.4e-74 281.2 388 47.7
Pp3c5_5390 Physcomitrium patens HOM05D006579 ORTHO05D007783 2.3e-71 273.1 272 60.7
SHI19775 Sapria himalayana HOM05D006579 ORTHO05D007783 8.6e-71 271.2 275 60.4
CSS0018503 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 9.6e-70 267.7 174 79.9
AagrBONN_evm.TU.Sc2ySwM_117.1030 Anthoceros agrestis HOM05D006579 ORTHO05D007783 2.4e-68 263.1 270 59.6
Rhsim01G0001200 Rhododendron simsii HOM05D006579 ORTHO05D007783 9.0e-68 261.2 174 80.5
unitig_747.g21528 Utricularia gibba HOM05D006579 ORTHO05D007783 1.1e-62 244.2 283 57.2
vmacro02350 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 2.4e-52 209.9 134 82.8
CBR_g3462 Chara braunii HOM05D006579 ORTHO05D007783 2.2e-50 203.4 219 56.2
HPP92_013492 Vanilla planifolia HOM05D006579 ORTHO05D007783 2.4e-49 199.9 160 71.9
Lju2566A1G36 Lonicera japonica HOM05D006579 ORTHO05D007783 1.0e-47 194.5 141 75.2
HanXRQChr09g0263751 Helianthus annuus HOM05D006579 ORTHO05D007783 2.2e-42 176.8 182 59.9
SEGI_25815 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 4.6e-40 169.1 128 74.2
SMO367G0899 Selaginella moellendorffii HOM05D006579 ORTHO05D007783 1.9e-38 163.7 134 69.4
Haze_05169 Corylus avellana HOM05D006579 ORTHO05D007783 6.9e-36 155.2 163 58.9
AUR62039016 Chenopodium quinoa HOM05D006579 ORTHO05D007783 5.9e-35 152.1 131 65.6
Cc00_g21250 Coffea canephora HOM05D006579 ORTHO05D007783 1.7e-29 134.0 77 87.0
SEGI_10424 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 4.1e-28 129.4 140 57.9
COL.COLO4_00282 Corchorus olitorius HOM05D006579 ORTHO05D007783 7.9e-24 115.2 96 67.7
Rhsim01G0001100 Rhododendron simsii HOM05D006579 ORTHO05D007783 4.4e-22 109.4 113 61.9
vmacro02349 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 3.7e-21 106.3 108 63.0
MCO04G420 Micromonas commoda HOM05D006579 ORTHO05D007783 4.2e-17 92.8 200 35.5
BcaB03g13515 Brassica carinata HOM05D006579 ORTHO05D007783 1.0e-10 71.6 72 61.1
Lju2566A1T41 Lonicera japonica HOM05D006579 ORTHO05D007783 2.9e-10 70.1 42 81.0
Lju2566A1T42 Lonicera japonica HOM05D006579 ORTHO05D007783 6.1e-08 62.4 99 50.5
Cre10.g423350 Chlamydomonas reinhardtii HOM05D006579 ORTHO05D007783 2.6e-06 57.0 192 31.2
MBI19_g32902_MAGBIO Magnolia biondii HOM05D000487 ORTHO05D011599 3.3e-06 56.6 45 71.1


User provided reference genes

Program Settings