Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 5.1e-31 137.1 70 100.0
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.4e-23 112.5 70 78.6
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 5.1e-23 110.5 68 77.9
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 8.8e-23 109.8 69 73.9
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 2.6e-22 108.2 70 75.7
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 2.8e-21 104.8 68 76.5
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 8.2e-21 103.2 68 73.5
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 1.4e-20 102.4 70 72.9
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.4e-20 102.4 70 72.9
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-20 102.4 70 72.9
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 1.4e-20 102.4 70 72.9
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.8e-20 102.1 70 74.3
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 4.1e-20 100.9 70 71.4
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 4.1e-20 100.9 70 70.0
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.3e-20 100.5 70 70.0
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 5.3e-20 100.5 70 71.4
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 6.9e-20 100.1 70 68.6
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 1.2e-19 99.4 70 70.0
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 1.2e-19 99.4 70 68.6
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 2.0e-19 98.6 60 76.7
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 2.0e-19 98.6 70 67.1
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 2.6e-19 98.2 69 66.7
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 3.4e-19 97.8 67 68.7
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.5e-19 97.4 68 67.6
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 7.7e-19 96.7 70 68.6
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.7e-18 95.5 69 68.1
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 2.2e-18 95.1 70 67.1
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.2e-18 95.1 68 70.6
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.2e-18 95.1 68 72.1
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 2.2e-18 95.1 68 64.7
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.9e-18 94.7 68 70.6
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 3.8e-18 94.4 70 61.4
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 6.5e-18 93.6 68 69.1
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 6.5e-18 93.6 61 72.1
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 8.5e-18 93.2 68 70.6
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 1.1e-17 92.8 70 60.0
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 1.4e-17 92.4 70 62.9
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 1.9e-17 92.0 70 64.3
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 1.9e-17 92.0 70 64.3
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 4.2e-17 90.9 61 70.5
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 4.2e-17 90.9 68 61.8
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 9.4e-17 89.7 70 62.9
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 1.2e-16 89.4 68 63.2
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 62.9
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 61.4
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.6e-16 89.0 70 61.4
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 2.1e-16 88.6 70 60.0
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 2.1e-16 88.6 70 60.0
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 2.7e-16 88.2 67 67.2
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 8.0e-16 86.7 70 62.9
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 8.0e-16 86.7 67 64.2
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 2.3e-15 85.1 70 58.6
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 3.0e-15 84.7 67 61.2
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 3.9e-15 84.3 66 57.6
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 1.5e-14 82.4 67 58.2
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 3.3e-14 81.3 61 63.9
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 3.3e-14 81.3 68 58.8
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 55.7
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 57.1
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 2.8e-13 78.2 72 56.9
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.8e-13 77.4 67 59.7
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 4.8e-13 77.4 66 57.6
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 8.2e-13 76.6 67 59.7
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 2.4e-12 75.1 68 54.4
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 3.1e-12 74.7 74 58.1
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 3.1e-12 74.7 67 53.7
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 4.1e-12 74.3 60 53.3
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.3e-12 73.9 71 53.5
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 7.0e-12 73.6 68 60.3
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 9.1e-12 73.2 65 56.9
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 2.0e-11 72.0 68 54.4
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.5e-11 71.2 71 52.1
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 3.5e-11 71.2 53 60.4
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 4.5e-11 70.9 70 50.0
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 1.7e-10 68.9 65 47.7
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 6.5e-10 67.0 68 50.0
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 1.9e-09 65.5 68 48.5
HPP92_017325 Vanilla planifolia HOM05D018973 ORTHO05D009951 1.2e-08 62.8 70 51.4
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 2.7e-08 61.6 74 41.9
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 6.1e-08 60.5 68 47.1
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 1.4e-07 59.3 70 48.6


User provided reference genes

Program Settings