Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 0.0e+00 1281.2 713 100.0
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 3.7e-278 961.4 713 78.3
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 9.5e-258 893.6 713 73.4
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 3.3e-250 868.6 715 71.2
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 7.8e-244 847.4 712 71.3
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 3.3e-242 842.0 701 70.2
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.3e-242 840.9 713 69.6
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.2e-239 833.6 713 69.1
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.2e-238 829.3 713 69.8
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.6e-236 821.6 730 68.1
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 7.9e-236 820.8 716 69.0
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.0e-235 820.5 713 69.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.0e-235 820.5 713 69.6
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 7.4e-234 814.3 758 65.7
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 8.1e-233 810.8 701 68.3
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-232 809.3 721 68.4
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 3.4e-231 805.4 719 68.3
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 9.9e-231 803.9 722 69.3
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 6.0e-228 794.7 713 66.3
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 1.0e-227 793.9 717 66.1
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.3e-227 793.5 713 67.7
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.8e-227 793.1 714 68.5
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 3.0e-227 792.3 716 66.2
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 5.1e-227 791.6 718 67.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 6.7e-227 791.2 713 67.3
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.5e-226 790.0 713 67.7
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 3.1e-224 782.3 713 66.6
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 4.9e-222 775.0 717 65.1
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 6.5e-222 774.6 714 66.8
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-220 770.0 721 65.7
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.9e-220 767.7 713 65.5
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 5.1e-219 765.0 717 65.4
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 2.8e-217 759.2 718 65.0
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 4.8e-217 758.4 718 65.0
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-214 748.4 713 64.8
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 6.5e-214 748.0 726 63.2
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 8.5e-214 747.7 716 63.0
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 4.2e-213 745.3 611 72.2
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 9.3e-213 744.2 726 63.1
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.6e-212 742.3 771 61.3
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 4.6e-212 741.9 740 62.2
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 8.7e-211 737.6 715 62.7
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 5.7e-210 734.9 719 63.4
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 7.4e-210 734.6 715 64.5
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 7.4e-210 734.6 801 60.0
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.1e-208 730.7 657 68.0
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.5e-207 726.9 615 71.1
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.0e-207 726.5 721 62.1
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.7e-206 723.4 713 62.4
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-205 720.7 713 63.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-205 720.3 731 62.2
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 9.7e-202 707.6 730 61.5
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.5e-199 700.3 726 61.6
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.5e-199 700.3 713 62.7
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.0e-199 699.9 709 61.9
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 3.4e-199 699.1 714 62.0
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 7.7e-199 698.0 714 60.6
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.2e-198 696.4 715 61.5
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 3.8e-198 695.7 711 60.9
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.5e-197 693.0 632 66.5
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 3.6e-196 689.1 709 61.2
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.0e-195 687.6 736 60.7
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.9e-195 685.6 742 59.3
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.5e-194 683.7 720 60.0
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.6e-194 682.9 720 60.3
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.3e-193 680.6 742 60.1
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.2e-191 674.1 734 58.7
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.0e-190 671.0 727 59.1
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.9e-190 669.5 732 57.9
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 3.8e-190 669.1 737 57.1
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 6.5e-190 668.3 726 58.8
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 6.5e-190 668.3 737 57.3
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.9e-189 666.8 750 56.9
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 5.5e-189 665.2 734 57.8
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.0e-187 661.0 718 59.3
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.2e-186 657.5 731 59.1
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.6e-186 656.4 726 58.0
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 3.3e-186 656.0 735 57.1
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 7.0e-184 648.3 731 58.0
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-183 646.7 708 59.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.0e-182 644.4 729 58.0
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.5e-181 640.6 733 57.0
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 4.7e-180 635.6 781 55.6
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 4.7e-180 635.6 716 57.5
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.0e-180 634.8 731 57.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.8e-179 633.6 731 57.6
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.3e-179 633.3 477 74.2
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 8.8e-179 631.3 740 56.8
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 4.8e-177 625.5 731 56.9
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.4e-176 622.1 741 56.4
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.2e-175 620.9 709 57.5
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 2.0e-175 620.2 718 56.5
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.0e-174 617.8 721 56.2
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.1e-173 614.4 765 54.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 9.5e-173 611.3 725 54.9
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 6.1e-172 608.6 762 54.5
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.2e-170 604.4 701 56.6
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 7.5e-170 601.7 723 54.6
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.7e-169 599.4 719 53.8
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 8.6e-166 588.2 729 53.2
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.8e-163 580.5 741 54.1
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 4.9e-161 572.4 731 53.1
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 7.3e-157 558.5 380 81.1
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 4.7e-148 529.3 730 50.1
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 6.8e-147 525.4 627 55.3
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 4.6e-143 512.7 731 49.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.3e-134 484.6 669 51.0
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.8e-131 474.2 449 64.4
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 8.9e-131 471.9 531 57.1
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.5e-111 406.8 504 55.6
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.0e-110 403.7 504 55.4
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 5.1e-110 402.9 727 43.5
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.2e-98 365.2 431 54.8
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.5e-98 363.2 229 86.5
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 2.2e-92 344.4 236 81.4
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.5e-90 336.7 231 82.3
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.0e-86 323.9 213 82.6
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.0e-86 323.9 213 82.6
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.1e-86 323.2 231 80.1
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 2.2e-81 307.8 438 49.8
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 5.5e-80 303.1 186 87.1
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 3.5e-74 283.9 440 47.5
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.5e-72 277.7 617 38.9
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 2.1e-71 274.6 383 49.3
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 9.7e-69 265.8 172 83.7
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.4e-67 261.9 455 41.5
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 7.0e-59 233.0 136 90.4
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 7.0e-51 206.5 418 41.9
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.9e-44 184.5 595 33.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.8e-39 167.9 325 43.4
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 5.2e-38 163.7 201 56.2
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 5.6e-32 143.7 94 77.7
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 2.3e-30 138.3 86 87.2
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 5.8e-29 133.7 243 41.2
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 4.9e-28 130.6 212 46.7
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 6.6e-25 120.2 189 48.7
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-23 115.5 70 90.0
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-23 115.5 70 90.0
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-23 115.5 70 90.0
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.4e-22 112.5 72 84.7
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.8e-21 107.1 297 34.3
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-20 105.9 70 87.1
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 6.0e-18 97.1 458 28.8
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 3.3e-16 91.3 304 33.6
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 5.2e-14 84.0 97 55.7
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.9e-11 75.5 67 62.7
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.5e-08 65.9 367 24.8
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.3e-08 64.3 50 76.0
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.3e-07 62.8 353 27.5
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.6e-07 62.4 464 24.8
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 2.1e-07 62.0 70 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 1.8e-06 58.9 363 25.3
Ah.14g083310 Amaranthus hybridus HOM05D004485 ORTHO05D005485 3.1e-06 58.2 234 30.8
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 5.3e-06 57.4 66 53.0
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 5.3e-06 57.4 344 23.3
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 9.0e-06 56.6 286 26.2


User provided reference genes

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