Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 3.3e-286 987.6 480 100.0
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.3e-239 832.8 469 84.0
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 8.7e-239 830.1 477 84.1
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 8.7e-239 830.1 469 86.1
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.1e-238 829.7 469 85.3
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.3e-238 828.2 467 84.4
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 7.4e-238 827.0 469 84.0
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 7.4e-238 827.0 467 84.2
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 3.7e-237 824.7 469 83.4
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.4e-236 822.8 469 82.7
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.4e-236 822.0 481 84.0
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 2.0e-235 818.9 469 83.4
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.6e-235 818.5 469 83.2
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.3e-234 816.2 464 84.7
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.2e-234 815.5 469 82.3
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 6.5e-234 813.9 469 82.5
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.5e-233 812.0 492 79.7
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 4.2e-233 811.2 467 81.8
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 5.5e-233 810.8 469 82.3
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 1.6e-232 809.3 465 83.9
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 6.0e-232 807.4 469 81.4
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 1.0e-231 806.6 469 80.6
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.3e-231 806.2 469 82.3
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.3e-231 806.2 465 82.2
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.8e-231 805.8 469 82.1
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 1.8e-231 805.8 471 81.3
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 1.8e-231 805.8 468 81.6
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 2.3e-231 805.4 468 81.6
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 3.0e-231 805.1 467 81.8
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.7e-231 803.9 469 81.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 8.7e-231 803.5 465 82.4
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.1e-230 803.1 469 81.7
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.9e-230 802.4 469 80.6
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.9e-230 802.4 464 81.7
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 3.3e-230 801.6 469 81.9
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 4.3e-230 801.2 469 81.4
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 4.3e-230 801.2 469 81.4
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 7.4e-230 800.4 470 81.9
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.7e-230 800.0 471 81.5
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 1.3e-229 799.7 467 81.6
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.2e-229 798.9 470 81.3
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.8e-229 798.5 469 81.0
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 2.8e-229 798.5 469 80.4
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 6.3e-229 797.3 473 81.0
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 8.2e-229 797.0 469 80.4
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.4e-228 796.2 473 81.0
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 2.4e-228 795.4 471 80.0
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.1e-228 795.0 473 80.8
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 9.0e-228 793.5 470 80.9
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.2e-227 793.1 469 80.8
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.2e-227 793.1 464 80.8
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.2e-227 793.1 469 80.6
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 1.5e-227 792.7 464 81.0
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 2.0e-227 792.3 468 80.6
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.6e-227 792.0 464 80.6
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 3.4e-227 791.6 470 80.6
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.5e-227 791.2 469 80.2
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.5e-227 791.2 469 80.2
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 5.9e-227 790.8 469 80.8
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.0e-226 790.0 469 78.3
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 5.0e-226 787.7 464 81.2
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 8.5e-226 786.9 466 80.9
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.1e-225 786.6 469 78.9
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.1e-225 786.6 470 79.6
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.1e-225 786.6 464 80.6
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 7.2e-225 783.9 470 79.4
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 9.4e-225 783.5 469 79.5
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 9.4e-225 783.5 469 79.5
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.2e-224 783.1 503 75.5
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.2e-224 783.1 479 78.5
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.6e-224 782.7 469 79.3
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.1e-224 782.3 469 80.0
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.1e-224 782.3 469 79.1
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 7.9e-224 780.4 469 78.7
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 7.9e-224 780.4 469 78.5
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 1.0e-223 780.0 470 78.5
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 3.9e-223 778.1 470 78.9
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 5.1e-223 777.7 470 79.6
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 6.7e-223 777.3 495 76.4
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 6.7e-223 777.3 464 79.7
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 4.3e-222 774.6 467 79.0
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 4.3e-222 774.6 467 78.8
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 4.3e-222 774.6 469 78.3
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 5.7e-222 774.2 470 77.2
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 5.7e-222 774.2 469 78.3
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 7.4e-222 773.9 465 78.5
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.3e-221 773.1 470 78.3
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.7e-221 772.7 470 77.0
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.7e-221 772.7 470 77.2
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.7e-221 772.7 470 77.2
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 4.8e-221 771.2 464 78.7
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 4.8e-221 771.2 464 78.7
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 6.3e-221 770.8 470 76.6
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 8.2e-221 770.4 470 76.6
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 2.4e-220 768.8 466 77.9
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 2.4e-220 768.8 465 78.7
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 2.4e-220 768.8 467 77.9
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 3.1e-220 768.5 467 78.8
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 4.1e-220 768.1 468 78.4
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.2e-219 766.5 465 78.5
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 2.6e-219 765.4 479 76.6
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 4.5e-219 764.6 466 77.7
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 2.2e-218 762.3 466 77.3
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 2.2e-218 762.3 466 77.3
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 6.5e-218 760.8 469 78.3
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 8.5e-218 760.4 466 77.3
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 4.2e-217 758.1 464 78.7
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 4.2e-217 758.1 440 81.8
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 1.4e-215 753.1 469 76.3
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 3.0e-215 751.9 469 75.7
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 2.0e-214 749.2 469 77.2
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 2.6e-214 748.8 475 76.0
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 5.7e-214 747.7 469 77.2
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.7e-213 745.0 465 77.6
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.4e-212 743.0 414 86.2
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.4e-212 743.0 468 77.1
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 2.6e-211 738.8 415 84.6
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 3.5e-211 738.4 469 76.3
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.5e-211 738.4 469 77.0
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.4e-209 733.0 474 73.4
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 9.4e-209 730.3 474 73.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 2.1e-208 729.2 474 73.0
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 6.1e-208 727.6 469 73.3
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.0e-207 726.9 469 73.6
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 2.3e-207 725.7 498 71.7
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 6.7e-207 724.2 464 75.4
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 8.8e-207 723.8 415 83.1
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 7.4e-206 720.7 429 78.6
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.1e-204 715.3 438 79.0
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 4.1e-204 714.9 429 78.3
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 4.1e-204 714.9 499 71.3
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.0e-202 710.3 524 68.1
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.4e-199 699.9 471 72.0
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 2.0e-198 696.0 507 68.6
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.8e-196 689.5 469 72.1
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.4e-196 689.1 467 73.7
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.0e-194 683.7 467 71.5
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 9.4e-193 677.2 490 68.4
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 8.8e-191 670.6 379 85.5
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 3.8e-186 655.2 475 68.6
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 5.0e-186 654.8 375 83.2
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.4e-183 646.7 469 67.4
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.3e-181 640.2 412 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 2.0e-174 616.3 468 63.0
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 2.9e-173 612.5 420 70.2
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.9e-172 609.8 441 64.9
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 2.7e-171 605.9 453 67.3
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.0e-162 577.4 466 60.3
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.0e-162 577.4 509 59.5
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 4.7e-160 568.5 329 82.4
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 2.1e-155 553.1 462 58.0
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 6.0e-139 498.4 350 71.7
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.5e-131 472.6 265 84.2
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.3e-128 464.2 292 75.7
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.7e-125 453.8 290 76.6
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 4.5e-110 402.5 238 80.7
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 3.8e-109 399.4 242 78.5
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.2e-108 396.4 250 74.4
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 4.6e-107 392.5 236 79.7
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-80 304.7 204 73.0
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 2.9e-77 293.5 192 74.0
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 3.1e-58 230.3 473 32.3
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 2.7e-54 217.2 132 75.0
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.8e-50 204.5 473 31.3
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 4.7e-35 153.3 109 67.9
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.0e-33 147.9 187 43.9
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.3e-28 130.6 90 64.4
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.1e-21 106.7 143 49.0
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 8.7e-21 105.9 57 84.2
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 3.6e-19 100.5 60 78.3
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 2.0e-17 94.7 148 37.2
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.7e-14 84.3 165 39.4
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.8e-10 71.6 35 88.6
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 5.5e-07 60.1 49 59.2
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 7.9e-06 56.2 37 73.0


User provided reference genes

Program Settings