Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 8.3e-96 353.6 167 100.0
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.1e-78 295.8 167 80.2
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 3.6e-75 285.0 167 76.6
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 3.6e-75 285.0 167 76.6
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.5e-73 279.6 167 74.9
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.6e-73 278.9 164 75.0
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 73.7
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 3.4e-73 278.5 167 72.5
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.4e-73 278.5 167 75.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 2.2e-72 275.8 167 71.9
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 3.8e-72 275.0 167 73.7
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 8.4e-72 273.9 167 73.1
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 8.4e-72 273.9 167 71.9
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.1e-71 273.5 164 74.4
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.4e-71 273.1 167 71.3
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 72.5
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 5.4e-71 271.2 167 73.1
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 7.1e-71 270.8 167 70.7
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.6e-70 269.6 167 73.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.6e-70 269.6 167 73.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.6e-70 269.6 167 72.5
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 2.7e-70 268.9 167 72.5
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 70.1
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 3.5e-70 268.5 166 71.7
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 71.3
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 70.7
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 70.7
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 3.9e-69 265.0 168 73.2
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 6.6e-69 264.2 167 72.5
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 8.7e-69 263.8 167 71.3
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 8.7e-69 263.8 167 74.3
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 3.3e-68 261.9 167 68.9
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 71.9
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 71.9
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 71.9
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 4.3e-68 261.5 174 70.7
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 7.3e-68 260.8 167 69.5
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 7.3e-68 260.8 167 68.9
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 7.3e-68 260.8 167 69.5
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 9.6e-68 260.4 167 71.9
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.3e-67 260.0 167 73.1
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 1.3e-67 260.0 167 70.1
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.6e-67 259.6 166 69.9
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 70.7
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.6e-67 258.5 161 71.4
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 4.8e-67 258.1 166 69.9
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 4.8e-67 258.1 165 71.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-66 256.9 166 68.7
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.1e-66 256.9 167 68.3
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 68.3
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 68.9
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.4e-66 256.5 166 69.9
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.4e-66 255.8 167 69.5
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.4e-66 255.8 167 69.5
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.0e-66 255.0 166 67.5
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 6.9e-66 254.2 166 67.5
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 67.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 68.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 9.0e-66 253.8 165 71.5
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.5e-65 253.1 167 68.9
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.5e-65 253.1 167 67.7
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 7.6e-65 250.8 167 67.7
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 66.5
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 64.1
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 67.7
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 67.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 3.8e-64 248.4 164 67.7
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 4.9e-64 248.1 167 67.7
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 6.4e-64 247.7 168 67.9
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 6.4e-64 247.7 168 67.9
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 6.4e-64 247.7 164 64.6
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 8.4e-64 247.3 168 67.3
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 8.4e-64 247.3 168 67.9
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-63 246.9 179 63.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 63.5
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 1.9e-63 246.1 168 67.3
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.9e-63 246.1 168 67.3
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.9e-63 246.1 168 67.3
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 2.4e-63 245.7 167 67.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 7.1e-63 244.2 168 66.7
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.2e-62 243.4 167 67.1
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.6e-62 243.0 189 61.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.6e-62 243.0 168 66.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 3.5e-62 241.9 168 66.7
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 4.6e-62 241.5 168 66.7
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 6.0e-62 241.1 166 66.9
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 7.9e-62 240.7 168 66.7
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 1.0e-61 240.4 168 66.1
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.3e-61 240.0 167 63.5
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 2.3e-61 239.2 168 67.3
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 5.1e-61 238.0 178 63.5
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 6.7e-61 237.7 167 65.3
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 8.7e-61 237.3 203 57.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 67.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.9e-60 236.1 189 58.7
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 5.6e-60 234.6 165 64.8
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 5.6e-60 234.6 167 62.9
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.2e-57 226.9 167 59.9
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.6e-57 225.7 167 62.9
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.3e-56 223.4 126 78.6
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.9e-56 222.2 165 61.8
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.9e-55 219.5 167 58.7
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 4.2e-55 218.4 189 54.5
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.2e-54 216.9 166 60.8
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 2.7e-54 215.7 219 47.9
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 1.8e-53 213.0 137 67.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.3e-53 212.6 175 57.1
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.5e-52 209.9 130 73.1
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.4e-50 202.6 128 71.9
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 3.4e-49 198.7 127 68.5
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 7.6e-49 197.6 166 56.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.9e-47 193.0 117 72.6
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 5.5e-47 191.4 167 50.9
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.2e-46 190.3 178 47.8
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.6e-46 189.9 134 64.9
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 4.6e-46 188.3 167 52.7
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 3.9e-45 185.3 166 50.0
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 4.8e-43 178.3 165 52.1
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 3.1e-42 175.6 164 52.4
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.0e-41 172.9 167 51.5
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.6e-41 172.6 165 49.1
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 5.0e-40 168.3 177 48.6
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.5e-39 166.0 133 57.1
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.5e-39 166.0 133 57.1
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 4.2e-39 165.2 118 64.4
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 1.2e-38 163.7 167 49.7
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.6e-38 163.3 164 49.4
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.0e-37 159.1 129 56.6
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 8.8e-37 157.5 131 59.5
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 2.5e-36 156.0 97 72.2
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 2.5e-36 156.0 97 72.2
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.1e-34 149.1 139 50.4
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.5e-33 146.7 150 48.7
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 2.6e-33 146.0 127 51.2
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.0e-32 144.1 98 64.3
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.4e-29 133.7 97 62.9
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.8e-26 123.2 80 70.0
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.1e-26 122.5 165 41.2
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 5.3e-26 121.7 151 46.4
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.9e-25 118.2 128 43.0
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 7.7e-25 117.9 165 40.6
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.7e-24 116.7 183 40.4
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 6.5e-24 114.8 112 51.8
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.3e-19 100.5 89 53.9
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 4.1e-18 95.5 100 52.0
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.9e-15 86.7 169 34.3
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-15 84.7 64 57.8
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-15 84.7 64 57.8
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.7e-14 82.0 65 55.4
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.0e-14 81.3 57 61.4
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.8e-13 77.8 64 54.7
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-12 77.0 57 59.6
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.0e-12 76.6 64 53.1
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.7e-08 63.5 61 42.6
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.9e-08 62.8 117 27.4
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 8.5e-08 61.2 63 50.8
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 7.2e-07 58.2 41 58.5
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 1.6e-06 57.0 44 59.1
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.7e-06 56.2 83 34.9
AUR62038391 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.0e-06 54.7 40 57.5


User provided reference genes

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