Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38935 Nelumbo nucifera HOM05D002382 ORTHO05D002622 6.3e-25 116.7 61 100.0
Nn6g35404 Nelumbo nucifera HOM05D002382 ORTHO05D002622 9.7e-10 66.2 54 66.7
Nn8g38937 Nelumbo nucifera HOM05D002382 ORTHO05D002622 1.3e-09 65.9 54 66.7
Nn8g38929 Nelumbo nucifera HOM05D002382 ORTHO05D002622 1.7e-09 65.5 52 69.2
ClCG11G001860 Citrullus lanatus HOM05D002382 ORTHO05D002622 2.8e-09 64.7 35 88.6
Dinv30402 Davidia involucrata HOM05D002382 ORTHO05D002622 4.8e-09 63.9 54 64.8
MBI01_g27632_MAGBIO Magnolia biondii HOM05D002382 ORTHO05D002622 6.3e-09 63.5 46 71.7
QL02p063464 Quercus lobata HOM05D002382 ORTHO05D002622 6.3e-09 63.5 35 88.6
CsaV3_2G001590 Cucumis sativus L. HOM05D002382 ORTHO05D002622 8.2e-09 63.2 35 85.7
CSS0041966 Camellia sinensis var. sinensis HOM05D002382 ORTHO05D002622 1.4e-08 62.4 54 63.0
Ciclev10009798m.g Citrus clementina HOM05D002382 ORTHO05D002622 1.4e-08 62.4 35 85.7
Gohir.A06G070600 Gossypium hirsutum HOM05D002382 ORTHO05D002622 1.4e-08 62.4 54 61.1
Prupe.7G214600 Prunus persica HOM05D002382 ORTHO05D002622 1.4e-08 62.4 35 88.6
CsaV3_3G044020 Cucumis sativus L. HOM05D002382 ORTHO05D002622 1.8e-08 62.0 54 61.1
vmacro16996 Vaccinium macrocarpon HOM05D002382 ORTHO05D002622 1.8e-08 62.0 35 85.7
Actinidia09018 Actinidia chinensis HOM05D002382 ORTHO05D002622 3.1e-08 61.2 54 61.1
Gohir.D06G069200 Gossypium hirsutum HOM05D002382 ORTHO05D002622 3.1e-08 61.2 54 61.1
Lsat_1_v5_gn_4_96020 Lactuca sativa HOM05D002382 ORTHO05D002622 3.1e-08 61.2 54 63.0
TAR626G1326 Trochodendron aralioides HOM05D002382 ORTHO05D002622 3.1e-08 61.2 54 59.3
CSS0024066 Camellia sinensis var. sinensis HOM05D002382 ORTHO05D002622 4.1e-08 60.8 54 61.1
Lj3g0026331 Lotus japonicus HOM05D002382 ORTHO05D002622 5.3e-08 60.5 54 59.3
Atru.chr7.1521 Acer truncatum HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 61.1
CAN.G635.28 Capsicum annuum HOM05D002382 ORTHO05D002622 6.9e-08 60.1 35 82.9
Cpa.g.sc32.99 Carica papaya HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 61.1
CiPaw.02G142300 Carya illinoinensis HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 61.1
ClCG07G013610 Citrullus lanatus HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 59.3
COL.COLO4_18241 Corchorus olitorius HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 61.1
MELO3C004617.2 Cucumis melo HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 61.1
MELO3C013029.2 Cucumis melo HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 59.3
HanXRQChr05g0141841 Helianthus annuus HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 61.1
Peaxi162Scf00207g01137 Petunia axillaris HOM05D002382 ORTHO05D002622 6.9e-08 60.1 35 82.9
RcHm_v2.0_Chr2g0092591 Rosa chinensis HOM05D002382 ORTHO05D002622 6.9e-08 60.1 35 82.9
Sopen06g021980 Solanum pennellii HOM05D002382 ORTHO05D002622 6.9e-08 60.1 35 82.9
PGSC0003DMG400004838 Solanum tuberosum HOM05D002382 ORTHO05D002622 6.9e-08 60.1 35 82.9
TAR624G0738 Trochodendron aralioides HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 61.1
GSVIVG01035350001 Vitis vinifera HOM05D002382 ORTHO05D002622 6.9e-08 60.1 54 59.3
CiPaw.02G142400 Carya illinoinensis HOM05D002382 ORTHO05D002622 9.1e-08 59.7 54 61.1
Gohir.A06G190300 Gossypium hirsutum HOM05D002382 ORTHO05D002622 9.1e-08 59.7 35 82.9
Gohir.D06G198700 Gossypium hirsutum HOM05D002382 ORTHO05D002622 9.1e-08 59.7 35 82.9
Gorai.010G231600 Gossypium raimondii HOM05D002382 ORTHO05D002622 9.1e-08 59.7 35 82.9
HanXRQChr11g0323501 Helianthus annuus HOM05D002382 ORTHO05D002622 9.1e-08 59.7 54 61.1
HanXRQChr12g0381141 Helianthus annuus HOM05D002382 ORTHO05D002622 9.1e-08 59.7 54 61.1
MD02G1072800 Malus domestica HOM05D002382 ORTHO05D002622 9.1e-08 59.7 35 85.7
MD15G1202600 Malus domestica HOM05D002382 ORTHO05D002622 9.1e-08 59.7 35 85.7
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 1.2e-07 59.3 54 61.1
Phvul.010G142300 Phaseolus vulgaris HOM05D002382 ORTHO05D002622 1.2e-07 59.3 54 59.3
Thecc.06G107400 Theobroma cacao HOM05D002382 ORTHO05D002622 1.2e-07 59.3 54 61.1
vmacro18824 Vaccinium macrocarpon HOM05D002382 ORTHO05D002622 1.2e-07 59.3 54 61.1
VMungo0331G1175 Vigna mungo HOM05D002382 ORTHO05D002622 1.2e-07 59.3 54 59.3
Cfa003609 Carpinus fangiana HOM05D002382 ORTHO05D002622 1.5e-07 58.9 54 59.3
Haze_15916 Corylus avellana HOM05D002382 ORTHO05D002622 1.5e-07 58.9 54 59.3
Dinv37936 Davidia involucrata HOM05D002382 ORTHO05D002622 1.5e-07 58.9 54 59.3
Duzib160G0391 Durio zibethinus HOM05D002382 ORTHO05D002622 1.5e-07 58.9 54 61.1
Duzib192G0237 Durio zibethinus HOM05D002382 ORTHO05D002622 1.5e-07 58.9 54 61.1
Duzib235G0971 Durio zibethinus HOM05D002382 ORTHO05D002622 1.5e-07 58.9 54 61.1
Lsat_1_v5_gn_5_134080 Lactuca sativa HOM05D002382 ORTHO05D002622 1.5e-07 58.9 54 59.3
Haze_25871 Corylus avellana HOM05D002382 ORTHO05D002622 2.0e-07 58.5 54 59.3
Sed0009368 Sechium edule HOM05D002382 ORTHO05D002622 2.0e-07 58.5 35 82.9
Sed0016574 Sechium edule HOM05D002382 ORTHO05D002622 2.0e-07 58.5 54 57.4
Sed0025872 Sechium edule HOM05D002382 ORTHO05D002622 2.0e-07 58.5 54 57.4
Sopen12g022910 Solanum pennellii HOM05D002382 ORTHO05D002622 2.0e-07 58.5 35 82.9
PGSC0003DMG400006491 Solanum tuberosum HOM05D002382 ORTHO05D002622 2.0e-07 58.5 35 82.9
arahy.Tifrunner.gnm1.ann1.D10BJJ Arachis hypogaea HOM05D002382 ORTHO05D002622 2.6e-07 58.2 54 57.4
arahy.Tifrunner.gnm1.ann1.SZ1DHP Arachis hypogaea HOM05D002382 ORTHO05D002622 2.6e-07 58.2 54 57.4
Lalb_Chr22g0351681 Lupinus albus HOM05D002382 ORTHO05D002622 2.6e-07 58.2 54 57.4
Nitab4.5_0002656g0040 Nicotiana tabacum HOM05D002382 ORTHO05D002622 2.6e-07 58.2 35 80.0
QL05p015769 Quercus lobata HOM05D002382 ORTHO05D002622 2.6e-07 58.2 52 63.5
Rhsim08G0230900 Rhododendron simsii HOM05D002382 ORTHO05D002622 2.6e-07 58.2 54 59.3
Solyc12g044720.2 Solanum lycopersicum HOM05D002382 ORTHO05D002622 2.6e-07 58.2 35 82.9
CiPaw.01G227500 Carya illinoinensis HOM05D002382 ORTHO05D002622 3.4e-07 57.8 54 59.3
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 3.4e-07 57.8 54 59.3
Gohir.D10G064000 Gossypium hirsutum HOM05D002382 ORTHO05D002622 3.4e-07 57.8 54 59.3
Lalb_Chr04g0263131 Lupinus albus HOM05D002382 ORTHO05D002622 3.4e-07 57.8 54 59.3
Peaxi162Scf00038g01242 Petunia axillaris HOM05D002382 ORTHO05D002622 3.4e-07 57.8 35 80.0
RcHm_v2.0_Chr2g0160241 Rosa chinensis HOM05D002382 ORTHO05D002622 3.4e-07 57.8 35 80.0
THA.LOC104817939 Tarenaya hassleriana HOM05D002382 ORTHO05D002622 3.4e-07 57.8 54 59.3
Gohir.A05G133500 Gossypium hirsutum HOM05D002382 ORTHO05D002622 4.5e-07 57.4 54 59.3
Gohir.D08G151866 Gossypium hirsutum HOM05D002382 ORTHO05D002622 4.5e-07 57.4 54 59.3
Gorai.004G157800 Gossypium raimondii HOM05D002382 ORTHO05D002622 4.5e-07 57.4 54 59.3
Gorai.009G139200 Gossypium raimondii HOM05D002382 ORTHO05D002622 4.5e-07 57.4 54 59.3
MBI04_g06217_MAGBIO Magnolia biondii HOM05D002382 ORTHO05D002622 4.5e-07 57.4 46 67.4
Solyc03g121330.3 Solanum lycopersicum HOM05D002382 ORTHO05D002622 4.5e-07 57.4 35 80.0
Thecc.09G094200 Theobroma cacao HOM05D002382 ORTHO05D002622 4.5e-07 57.4 54 59.3
Aqoxy7G01309 Aquilegia oxysepala HOM05D002382 ORTHO05D002622 5.9e-07 57.0 54 53.7
ECA232G3199 Erigeron canadensis HOM05D002382 ORTHO05D002622 5.9e-07 57.0 54 57.4
FAN19G0103 Fragaria x ananassa HOM05D002382 ORTHO05D002622 5.9e-07 57.0 35 80.0
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.9e-07 57.0 35 80.0
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.9e-07 57.0 35 80.0
Manes.04G137300 Manihot esculenta HOM05D002382 ORTHO05D002622 5.9e-07 57.0 54 63.0
Potri.001G194000 Populus trichocarpa HOM05D002382 ORTHO05D002622 5.9e-07 57.0 54 59.3
Sopen03g040140 Solanum pennellii HOM05D002382 ORTHO05D002622 5.9e-07 57.0 35 80.0
PGSC0003DMG400002597 Solanum tuberosum HOM05D002382 ORTHO05D002622 5.9e-07 57.0 35 80.0
THA.LOC104805921 Tarenaya hassleriana HOM05D002382 ORTHO05D002622 5.9e-07 57.0 54 59.3
A07p01010 Brassica napus HOM05D002382 ORTHO05D002622 7.7e-07 56.6 54 59.3
BraA07t27902Z Brassica rapa HOM05D002382 ORTHO05D002622 7.7e-07 56.6 54 59.3
Cc04_g02250 Coffea canephora HOM05D002382 ORTHO05D002622 7.7e-07 56.6 54 59.3
FvH4_1g06820 Fragaria vesca HOM05D002382 ORTHO05D002622 7.7e-07 56.6 35 80.0
Manes.11G029000 Manihot esculenta HOM05D002382 ORTHO05D002622 7.7e-07 56.6 54 63.0
ECA234G2625 Erigeron canadensis HOM05D000617 ORTHO05D000478 1.0e-06 56.2 54 55.6
Thhalv10002093m.g Eutrema salsugineum HOM05D002382 ORTHO05D002622 1.0e-06 56.2 54 57.4
AT4G29410 Arabidopsis thaliana HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 57.4
arahy.Tifrunner.gnm1.ann1.90BG8T Arachis hypogaea HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 55.6
arahy.Tifrunner.gnm1.ann1.VH4DX9 Arachis hypogaea HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 55.6
BcaC09g51726 Brassica carinata HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 57.4
A01p08620 Brassica napus HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 57.4
C01p10090 Brassica napus HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 57.4
BolC1t00967H Brassica oleracea HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 57.4
CANSAT56G0099 Cannabis sativa HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 53.7
Thhalv10026507m.g Eutrema salsugineum HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 57.4
Glyma.07G012800 Glycine max HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 53.7
Glyma.08G196500 Glycine max HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 53.7
Glyma.15G022700 Glycine max HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 53.7
VMungo1080G0973 Vigna mungo HOM05D002382 ORTHO05D002622 1.3e-06 55.8 54 53.7
BcaB08g34878 Brassica carinata HOM05D002382 ORTHO05D002622 1.7e-06 55.5 54 57.4
CAN.G1668.5 Capsicum annuum HOM05D002382 ORTHO05D002622 1.7e-06 55.5 35 74.3
FAN28G2678 Fragaria x ananassa HOM05D002382 ORTHO05D002622 1.7e-06 55.5 35 77.1
Gohir.A10G062300 Gossypium hirsutum HOM05D002382 ORTHO05D002622 1.7e-06 55.5 54 57.4
Gorai.011G067900 Gossypium raimondii HOM05D002382 ORTHO05D002622 1.7e-06 55.5 54 57.4
Phvul.005G161300 Phaseolus vulgaris HOM05D002382 ORTHO05D002622 1.7e-06 55.5 54 57.4
Potri.003G045500 Populus trichocarpa HOM05D002382 ORTHO05D002622 1.7e-06 55.5 54 57.4
AT2G19730 Arabidopsis thaliana HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
BcaB03g16754 Brassica carinata HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
BcaC04g22833 Brassica carinata HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
BcaC06g36612 Brassica carinata HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
C07p02170 Brassica napus HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
C09p14830 Brassica napus HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
BolC7t40626H Brassica oleracea HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
BolC9t54383H Brassica oleracea HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
BraA09t36896Z Brassica rapa HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
Carub.0007s1113 Capsella rubella HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
COL.COLO4_30601 Corchorus olitorius HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
Gorai.N005300 Gossypium raimondii HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
Lalb_Chr25g0280551 Lupinus albus HOM05D002382 ORTHO05D002622 2.2e-06 55.1 54 57.4
Carub.0003s3401 Capsella rubella HOM05D002382 ORTHO05D002622 2.9e-06 54.7 54 55.6
Migut.I00997 Erythranthe guttata HOM05D002382 ORTHO05D002622 2.9e-06 54.7 35 82.9
Oeu052816.1 Olea europaea HOM05D002382 ORTHO05D002622 2.9e-06 54.7 35 82.9
Prupe.3G052900 Prunus persica HOM05D002382 ORTHO05D002622 2.9e-06 54.7 35 77.1
CDE02G0848 Ceratophyllum demersum HOM05D000121 ORTHO05D000102 3.8e-06 54.3 46 69.6
Glyma.13G352100 Glycine max HOM05D002382 ORTHO05D002622 3.8e-06 54.3 54 51.9
Medtr8g015570 Medicago truncatula HOM05D002382 ORTHO05D002622 3.8e-06 54.3 35 77.1
SEGI_03526 Sequoiadendron giganteum HOM05D002382 ORTHO05D002622 3.8e-06 54.3 35 74.3
Zm00001eb294420 Zea mays HOM05D002382 ORTHO05D002622 3.8e-06 54.3 35 74.3
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.0e-06 53.9 35 77.1
Gorai.010G080800 Gossypium raimondii HOM05D002382 ORTHO05D002622 5.0e-06 53.9 62 53.2
Hma1.2p1_0388F.1_g142140 Hydrangea macrophylla HOM05D002382 ORTHO05D002622 5.0e-06 53.9 54 55.6
Nitab4.5_0004848g0090 Nicotiana tabacum HOM05D002382 ORTHO05D002622 5.0e-06 53.9 35 77.1
Nitab4.5_0006071g0060 Nicotiana tabacum HOM05D002382 ORTHO05D002622 5.0e-06 53.9 35 77.1
Os05g0541900 Oryza sativa ssp. japonica HOM05D002382 ORTHO05D002622 5.0e-06 53.9 36 77.8
Sp7g27290 Schrenkiella parvula HOM05D002382 ORTHO05D002622 5.0e-06 53.9 54 55.6
ATR0789G113 Amborella trichopoda HOM05D002382 ORTHO05D002622 6.5e-06 53.5 54 51.9
MSTRG.22607 Avicennia marina HOM05D002382 ORTHO05D002622 6.5e-06 53.5 54 59.3
Ca_01182_v3 Cicer arietinum L. HOM05D002382 ORTHO05D002622 6.5e-06 53.5 35 71.4
Ca_23292_v3 Cicer arietinum L. HOM05D002382 ORTHO05D002622 6.5e-06 53.5 35 71.4
Eucgr.F03101 Eucalyptus grandis HOM05D002382 ORTHO05D002622 6.5e-06 53.5 54 55.6
PGR102G0724 Punica granatum HOM05D002382 ORTHO05D002622 6.5e-06 53.5 54 53.7
THA.LOC104810559 Tarenaya hassleriana HOM05D002382 ORTHO05D002622 6.5e-06 53.5 54 55.6
MSTRG.11006 Avicennia marina HOM05D002382 ORTHO05D002622 8.5e-06 53.1 54 59.3
MD09G1196500 Malus domestica HOM05D002382 ORTHO05D002622 8.5e-06 53.1 35 77.1
Sp3g33060 Schrenkiella parvula HOM05D002382 ORTHO05D002622 8.5e-06 53.1 54 55.6


User provided reference genes

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