Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.2e-100 369.8 182 100.0
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.4e-56 222.6 149 75.2
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 5.0e-54 214.9 146 74.7
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 5.0e-54 214.9 145 73.8
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 7.3e-53 211.1 146 71.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.8e-52 209.1 145 72.4
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 4.7e-52 208.4 146 70.5
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 4.7e-52 208.4 145 69.0
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 6.2e-52 208.0 149 68.5
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.8e-51 206.5 145 68.3
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.3e-51 206.1 145 70.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 2.3e-51 206.1 146 67.8
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 8.9e-51 204.1 145 70.3
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.5e-50 203.4 146 68.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.0e-50 203.0 148 66.9
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 2.6e-50 202.6 156 64.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 4.4e-50 201.8 145 65.5
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 4.4e-50 201.8 146 67.1
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 5.8e-50 201.4 158 64.6
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 7.5e-50 201.1 160 62.5
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 7.5e-50 201.1 146 65.8
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 9.8e-50 200.7 159 63.5
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.7e-49 199.9 145 64.8
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.2e-49 199.5 158 64.6
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 2.9e-49 199.1 158 63.3
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 3.7e-49 198.7 146 64.4
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 3.7e-49 198.7 146 64.4
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 6.4e-49 198.0 146 64.4
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 8.3e-49 197.6 146 64.4
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 8.3e-49 197.6 146 65.1
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 8.3e-49 197.6 146 66.4
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.1e-48 197.2 145 66.9
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.1e-48 197.2 147 63.3
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.9e-48 196.4 146 63.7
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.4e-48 196.1 146 63.7
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 2.4e-48 196.1 146 65.8
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 3.2e-48 195.7 146 63.7
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 3.2e-48 195.7 150 66.7
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 3.2e-48 195.7 146 63.0
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.4e-48 194.9 146 63.0
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 7.0e-48 194.5 146 63.0
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 7.0e-48 194.5 145 65.5
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 7.0e-48 194.5 146 66.4
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 7.0e-48 194.5 145 65.5
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 9.2e-48 194.1 146 62.3
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.2e-47 193.7 144 63.2
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.2e-47 193.7 146 63.0
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.2e-47 193.7 146 64.4
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.2e-47 193.7 143 65.0
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.2e-47 193.7 146 65.8
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.6e-47 193.4 145 64.8
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.6e-47 193.4 145 63.4
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.6e-47 193.4 145 64.8
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 2.0e-47 193.0 136 67.6
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.5e-47 192.2 133 72.9
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.5e-47 192.2 145 62.8
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 3.5e-47 192.2 144 62.5
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 3.5e-47 192.2 144 62.5
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.5e-47 192.2 146 67.8
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 4.6e-47 191.8 141 64.5
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 4.6e-47 191.8 146 64.4
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 6.0e-47 191.4 146 62.3
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 6.0e-47 191.4 145 64.1
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 7.8e-47 191.0 146 63.0
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 7.8e-47 191.0 146 63.0
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 7.8e-47 191.0 144 62.5
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 7.8e-47 191.0 144 62.5
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 7.8e-47 191.0 144 62.5
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 7.8e-47 191.0 146 61.6
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.0e-46 190.7 146 62.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.0e-46 190.7 144 63.2
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.3e-46 190.3 145 62.1
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.3e-46 190.3 145 62.1
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 2.3e-46 189.5 145 63.4
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.0e-46 189.1 145 63.4
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 3.0e-46 189.1 145 63.4
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.9e-46 188.7 145 61.4
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.9e-46 188.7 145 64.1
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 8.6e-46 187.6 146 62.3
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 8.6e-46 187.6 146 62.3
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.1e-45 187.2 133 70.7
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.1e-45 187.2 146 63.0
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.5e-45 186.8 138 65.2
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 3.3e-45 185.7 146 63.0
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 4.3e-45 185.3 134 65.7
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 4.3e-45 185.3 139 62.6
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 4.3e-45 185.3 135 68.9
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 4.3e-45 185.3 141 63.8
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.2e-44 183.7 146 60.3
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.2e-44 183.7 157 61.1
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.8e-44 182.6 164 57.9
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 6.2e-44 181.4 145 62.1
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 6.2e-44 181.4 146 61.0
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.4e-43 180.3 164 57.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 1.8e-43 179.9 147 61.2
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.3e-43 179.5 162 58.0
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 6.8e-43 177.9 151 62.3
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 2.0e-42 176.4 164 54.9
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.3e-41 173.7 176 52.3
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.9e-41 172.6 133 60.9
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.4e-40 168.3 145 58.6
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.6e-39 166.8 160 56.2
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 5.1e-38 161.8 132 58.3
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 9.5e-37 157.5 113 67.3
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 3.6e-36 155.6 147 51.7
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.1e-35 154.1 119 61.3
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.4e-35 153.7 117 63.2
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 4.0e-35 152.1 133 54.1
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 6.8e-35 151.4 112 63.4
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 7.6e-34 147.9 132 51.5
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 9.2e-32 141.0 137 56.2
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 7.8e-31 137.9 113 61.1
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 5.6e-29 131.7 133 47.4
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.1e-27 127.5 174 43.1
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 6.4e-25 118.2 89 60.7
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.2e-24 115.5 76 65.8
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 7.8e-23 111.3 94 64.9
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.0e-22 110.9 145 41.4
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.5e-21 107.1 93 59.1
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.4e-19 100.5 60 73.3
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 9.0e-19 97.8 89 55.1
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.3e-17 94.0 59 67.8
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.0e-14 84.3 46 78.3
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 5.6e-13 78.6 131 33.6
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.1e-12 76.6 76 51.3
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.4e-11 73.2 41 75.6
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.6e-10 68.2 50 60.0
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.8e-06 57.0 31 77.4


User provided reference genes

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