Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.8e-97 359.4 200 100.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.7e-90 335.1 201 90.0
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 7.6e-88 327.4 200 82.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.3e-87 326.6 200 81.0
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.7e-87 326.2 200 80.5
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.9e-87 325.5 201 80.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.9e-86 322.8 200 81.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.5e-86 322.4 200 80.5
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.2e-86 322.0 200 79.0
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 7.2e-86 320.9 200 80.5
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-85 320.1 200 80.0
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 200 78.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 200 78.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.6e-85 319.7 200 80.5
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.1e-85 319.3 200 80.0
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.7e-85 318.9 200 79.5
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.7e-85 318.9 200 80.5
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.6e-85 318.2 199 80.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 6.1e-85 317.8 200 80.0
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.1e-85 317.8 200 80.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.8e-84 316.2 200 78.5
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 5.1e-84 314.7 200 78.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 5.1e-84 314.7 200 80.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.5e-83 313.2 200 78.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.9e-83 312.8 201 78.6
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 3.3e-83 312.0 200 78.0
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 3.3e-83 312.0 200 78.5
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.3e-83 311.6 200 77.5
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.7e-83 311.2 204 77.9
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 7.4e-83 310.8 200 78.5
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 9.7e-83 310.5 200 78.0
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.3e-82 310.1 200 78.0
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.6e-82 309.7 198 76.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.6e-82 309.7 200 77.0
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.2e-82 309.3 200 77.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.7e-82 308.5 200 76.5
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.7e-82 308.5 200 76.5
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.8e-82 308.1 201 75.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.8e-82 308.1 204 76.0
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 6.3e-82 307.8 200 75.0
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 6.3e-82 307.8 200 83.5
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.1e-81 307.0 200 77.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 77.6
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.1e-81 307.0 200 75.5
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 75.1
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.4e-81 306.6 200 75.5
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.8e-81 306.2 200 78.0
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.4e-81 305.8 200 75.0
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-81 305.8 204 77.9
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 3.1e-81 305.4 200 74.5
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.1e-81 305.4 200 74.5
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.1e-81 305.4 200 76.5
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 5.3e-81 304.7 199 75.9
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.3e-81 304.7 200 76.5
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.5e-80 303.1 204 75.5
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.5e-80 303.1 200 75.0
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.0e-80 302.8 200 76.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.0e-80 302.8 203 73.9
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.6e-80 302.4 200 76.5
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 7.7e-80 300.8 200 73.0
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.0e-79 300.4 200 77.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.0e-79 300.4 200 73.0
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.3e-79 300.1 200 73.5
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.3e-79 300.1 200 73.5
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 200 73.5
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.3e-79 300.1 200 72.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.7e-79 299.7 200 74.0
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.7e-79 299.7 200 75.0
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.2e-79 299.3 200 72.5
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.2e-79 299.3 200 74.5
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 2.9e-79 298.9 200 73.5
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.9e-79 298.9 200 75.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 6.5e-79 297.7 200 73.0
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 6.5e-79 297.7 200 73.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 6.5e-79 297.7 200 73.5
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 8.5e-79 297.4 200 75.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.5e-79 297.4 200 75.0
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.5e-79 297.4 200 75.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 8.5e-79 297.4 200 73.5
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 8.5e-79 297.4 200 74.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.4e-78 296.6 200 74.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-78 296.2 200 72.5
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.9e-78 296.2 203 73.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.9e-78 296.2 200 77.5
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.5e-78 295.8 201 73.1
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.5e-78 295.8 198 74.7
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.2e-78 295.4 200 73.5
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.2e-78 295.0 200 73.0
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.2e-78 295.0 201 83.6
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 200 73.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.1e-77 292.7 201 72.6
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.1e-77 292.7 200 72.5
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.7e-77 292.4 201 72.6
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.6e-77 292.0 201 73.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.6e-77 292.0 200 73.0
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.6e-77 292.0 200 72.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.6e-77 291.6 189 77.2
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.9e-77 290.8 223 68.2
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.0e-76 290.4 202 75.2
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.4e-76 290.0 200 72.5
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.4e-76 290.0 208 72.1
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.8e-76 289.7 199 71.9
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.8e-76 289.7 200 72.0
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.8e-76 289.7 200 78.5
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.3e-76 289.3 182 76.9
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.3e-76 289.3 200 72.5
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.0e-76 288.9 201 71.6
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.9e-76 288.5 202 71.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.9e-76 288.5 212 70.8
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 3.9e-76 288.5 202 71.8
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 5.1e-76 288.1 223 67.7
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 8.8e-76 287.3 181 78.5
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 8.8e-76 287.3 200 78.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 8.8e-76 287.3 200 78.5
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.6e-75 285.8 216 68.5
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 3.3e-75 285.4 182 77.5
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 3.3e-75 285.4 200 71.0
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 9.7e-75 283.9 207 72.0
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 2.2e-74 282.7 200 71.5
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 8.2e-74 280.8 201 78.1
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.4e-73 280.0 198 70.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 6.9e-73 277.7 216 69.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.0e-72 276.2 249 59.8
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 7.7e-72 274.2 182 74.7
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.0e-71 273.9 199 68.3
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.8e-71 271.9 182 75.3
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.1e-70 270.4 198 67.2
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.1e-70 270.4 213 67.1
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.2e-69 266.9 195 70.8
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.1e-69 266.2 200 74.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.1e-69 264.6 181 73.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 2.3e-68 262.7 191 71.7
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.2e-66 256.1 204 66.2
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 3.7e-66 255.4 221 61.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 4.1e-65 251.9 182 69.8
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 5.3e-65 251.5 233 58.4
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 7.0e-65 251.1 191 64.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 7.0e-65 251.1 193 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 3.8e-63 245.4 184 65.2
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 5.5e-62 241.5 198 61.6
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.3e-60 236.1 181 72.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.6e-59 232.6 200 62.0
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 9.7e-59 230.7 153 77.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.9e-54 216.5 201 57.7
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.0e-48 196.4 111 88.3
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 8.6e-47 191.0 111 84.7
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.3e-44 183.0 183 56.8
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 9.2e-41 171.0 92 92.4
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 7.8e-40 167.9 93 88.2
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.2e-37 160.6 93 83.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.8e-37 159.5 189 50.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.8e-32 141.4 107 67.3
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.9e-31 139.0 70 100.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.1e-29 133.3 97 69.1
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 8.0e-29 131.3 73 80.8
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.5e-27 127.1 203 42.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 5.8e-27 125.2 91 70.3
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.4e-25 120.6 70 72.9
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 3.9e-23 112.5 192 39.6
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-22 110.5 100 64.0
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 4.0e-20 102.4 189 36.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.2e-19 100.9 98 58.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.1e-17 94.4 200 37.5
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.4e-17 93.2 59 71.2
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.5e-16 89.4 52 75.0
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 7.8e-16 88.2 67 58.2
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 5.6e-14 82.0 77 55.8
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.3e-14 81.6 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.5e-14 81.3 53 77.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.1e-12 76.3 53 66.0
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 7.6e-11 71.6 76 48.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.8e-08 61.6 72 50.0
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 9.6e-06 54.7 57 54.4


User provided reference genes

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