Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38711 Nelumbo nucifera HOM05D000003 ORTHO05D000006 1.5e-64 249.2 113 100.0
Aqoxy1G03380 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.1e-11 73.6 104 32.7
PSO541G0393 Papaver somniferum HOM05D000003 ORTHO05D000006 2.8e-10 68.9 98 33.7
Atru.chr5.2264 Acer truncatum HOM05D000003 ORTHO05D000006 6.2e-10 67.8 96 32.3
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 8.1e-10 67.4 92 34.8
Aa31sc153G50 Aethionema arabicum HOM05D000003 ORTHO05D000411 1.4e-09 66.6 83 33.7
COL.COLO4_27142 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.4e-09 66.6 87 33.3
Psat1g220680 Pisum sativum HOM05D000003 ORTHO05D000004 1.4e-09 66.6 92 35.9
Medtr7g406750 Medicago truncatula HOM05D000024 ORTHO05D000006 1.8e-09 66.2 86 39.5
COL.COLO4_10338 Corchorus olitorius HOM05D000003 ORTHO05D000006 4.0e-09 65.1 87 33.3
PSO541G2151 Papaver somniferum HOM05D000003 ORTHO05D000004 4.0e-09 65.1 96 30.2
TPR.G1529 Trifolium pratense HOM05D000003 ORTHO05D000004 4.0e-09 65.1 98 32.7
CANSAT54G1020 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-09 64.7 91 37.4
Atru.chr13.2518 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-09 63.9 98 31.6
CANSAT25G1919 Cannabis sativa HOM05D000003 ORTHO05D000006 8.9e-09 63.9 92 34.8
ECA238G4169 Erigeron canadensis HOM05D000014 ORTHO05D000004 8.9e-09 63.9 104 30.8
PSO111G0043 Papaver somniferum HOM05D000003 ORTHO05D000006 1.5e-08 63.2 99 30.3
TAR084G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 2.0e-08 62.8 87 29.9
PSO478G4982 Papaver somniferum HOM05D000003 ORTHO05D000006 2.6e-08 62.4 96 32.3
TPR.G13276 Trifolium pratense HOM05D000003 ORTHO05D000004 3.4e-08 62.0 98 30.6
PSO782G2271 Papaver somniferum HOM05D000003 ORTHO05D000006 4.4e-08 61.6 99 27.3
Psat7g191840 Pisum sativum HOM05D000003 ORTHO05D000006 4.4e-08 61.6 87 35.6
Sopen00g005560 Solanum pennellii HOM05D000003 ORTHO05D000006 5.8e-08 61.2 105 26.7
TAR536G0010 Trochodendron aralioides HOM05D000003 ORTHO05D000006 5.8e-08 61.2 99 30.3
Atru.chr13.893 Acer truncatum HOM05D000003 ORTHO05D000006 7.5e-08 60.8 91 34.1
Aqoxy1G02664 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.5e-08 60.8 97 26.8
CAN.G79.73 Capsicum annuum HOM05D000003 ORTHO05D000006 7.5e-08 60.8 82 30.5
Nn8g41018 Nelumbo nucifera HOM05D000003 ORTHO05D000006 7.5e-08 60.8 89 31.5
Psat3g015600 Pisum sativum HOM05D000003 ORTHO05D000006 7.5e-08 60.8 98 32.7
Aa31sc480G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.9e-08 60.5 83 30.1
CANSAT21G1068 Cannabis sativa HOM05D000003 ORTHO05D000006 9.9e-08 60.5 104 27.9
Dinv10916 Davidia involucrata HOM05D000003 ORTHO05D000006 9.9e-08 60.5 106 29.2
Aqoxy3G01721 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.3e-07 60.1 103 26.2
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-07 60.1 101 27.7
PSO210G1224 Papaver somniferum HOM05D000003 ORTHO05D000006 1.3e-07 60.1 96 29.2
PSO648G0050 Papaver somniferum HOM05D000003 ORTHO05D000006 1.3e-07 60.1 83 31.3
Atru.chr7.1973 Acer truncatum HOM05D000003 ORTHO05D000006 1.7e-07 59.7 93 30.1
PSO384G2957 Papaver somniferum HOM05D000003 ORTHO05D000006 1.7e-07 59.7 102 28.4
TPR.G23566 Trifolium pratense HOM05D000003 ORTHO05D000007 1.7e-07 59.7 85 34.1
EL10Ac5g11879 Beta vulgaris HOM05D000003 ORTHO05D000007 2.2e-07 59.3 106 32.1
AUR62014610 Chenopodium quinoa HOM05D000003 ORTHO05D011948 2.2e-07 59.3 92 31.5
Sopen00g009820 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-07 59.3 104 29.8
Sopen00g011080 Solanum pennellii HOM05D000003 ORTHO05D000006 2.2e-07 59.3 104 27.9
TPR.G35752 Trifolium pratense HOM05D000003 ORTHO05D010993 2.2e-07 59.3 86 34.9
CANSAT56G3504 Cannabis sativa HOM05D000003 ORTHO05D000006 2.9e-07 58.9 91 35.2
Rhsim05G0074900 Rhododendron simsii HOM05D000542 ORTHO05D000202 2.9e-07 58.9 89 31.5
AUR62014893 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.7e-07 58.5 95 32.6
COL.COLO4_19860 Corchorus olitorius HOM05D003999 ORTHO05D000006 3.7e-07 58.5 85 30.6
Nitab4.5_0000835g0050 Nicotiana tabacum HOM05D000003 ORTHO05D000006 3.7e-07 58.5 102 29.4
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 3.7e-07 58.5 95 30.5
SHI47082 Sapria himalayana HOM05D000024 ORTHO05D000006 3.7e-07 58.5 100 28.0
Aqoxy4G01060 Aquilegia oxysepala HOM05D002351 ORTHO05D000006 4.9e-07 58.2 104 28.8
CANSAT01G1810 Cannabis sativa HOM05D000003 ORTHO05D000006 4.9e-07 58.2 102 30.4
CANSAT25G2713 Cannabis sativa HOM05D000003 ORTHO05D000007 4.9e-07 58.2 91 33.0
CAN.G276.7 Capsicum annuum HOM05D000024 ORTHO05D000006 4.9e-07 58.2 96 27.1
Dinv18035 Davidia involucrata HOM05D000003 ORTHO05D000006 4.9e-07 58.2 106 28.3
Sopen00g006710 Solanum pennellii HOM05D000003 ORTHO05D000004 4.9e-07 58.2 104 26.9
Atru.chr13.2020 Acer truncatum HOM05D000003 ORTHO05D000006 6.4e-07 57.8 96 30.2
BcaC01g04543 Brassica carinata HOM05D000848 ORTHO05D003342 6.4e-07 57.8 88 33.0
MBI03_g26338_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 6.4e-07 57.8 98 29.6
QL93p0151_0017 Quercus lobata HOM05D000003 ORTHO05D000006 6.4e-07 57.8 93 31.2
TPR.G16991 Trifolium pratense HOM05D001538 ORTHO05D000007 6.4e-07 57.8 85 28.2
TPR.G8630 Trifolium pratense HOM05D000003 ORTHO05D000004 6.4e-07 57.8 86 36.0
TAR055G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000006 6.4e-07 57.8 87 27.6
CANSAT35G1839 Cannabis sativa HOM05D000024 ORTHO05D000006 8.3e-07 57.4 104 26.9
CANSAT42G0001 Cannabis sativa HOM05D000003 ORTHO05D000006 8.3e-07 57.4 104 26.0
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-07 57.4 101 26.7
CiPaw.09G186400 Carya illinoinensis HOM05D000003 ORTHO05D000006 8.3e-07 57.4 87 31.0
PSO135G0136 Papaver somniferum HOM05D000003 ORTHO05D000006 8.3e-07 57.4 88 35.2
PSO832G4459 Papaver somniferum HOM05D000003 ORTHO05D000006 8.3e-07 57.4 96 28.1
Sopen00g013580 Solanum pennellii HOM05D000003 ORTHO05D000004 8.3e-07 57.4 104 26.0
CANSAT25G3393 Cannabis sativa HOM05D000024 ORTHO05D000006 1.1e-06 57.0 104 25.0
COL.COLO4_04259 Corchorus olitorius HOM05D007567 ORTHO05D000126 1.1e-06 57.0 90 31.1
Dinv29992 Davidia involucrata HOM05D000024 ORTHO05D000006 1.1e-06 57.0 100 26.0
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 1.1e-06 57.0 89 29.2
Psat2g068680 Pisum sativum HOM05D000024 ORTHO05D000006 1.1e-06 57.0 89 30.3
Sopen00g009650 Solanum pennellii HOM05D000003 ORTHO05D000004 1.1e-06 57.0 107 29.0
PGSC0003DMG400045189 Solanum tuberosum HOM05D000003 ORTHO05D000006 1.1e-06 57.0 92 28.3
Atru.chr5.1908 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-06 56.6 89 31.5
Atru.chr9.1186 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-06 56.6 89 31.5
BcaC03g15401 Brassica carinata HOM05D000003 ORTHO05D000006 1.4e-06 56.6 83 27.7
FvH4_1g27351 Fragaria vesca HOM05D000003 ORTHO05D000006 1.4e-06 56.6 91 29.7
TPR.G6426 Trifolium pratense HOM05D000003 ORTHO05D000006 1.4e-06 56.6 70 40.0
Atru.chr9.1331 Acer truncatum HOM05D000003 ORTHO05D000006 1.9e-06 56.2 93 32.3
RcHm_v2.0_Chr3g0468741 Rosa chinensis HOM05D000003 ORTHO05D000006 1.9e-06 56.2 87 29.9
Sopen00g012830 Solanum pennellii HOM05D000003 ORTHO05D000004 1.9e-06 56.2 105 26.7
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.9e-06 56.2 96 29.2
CANSAT53G0001 Cannabis sativa HOM05D000003 ORTHO05D000006 2.4e-06 55.8 91 30.8
CANSAT64G1333 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-06 55.8 91 30.8
CiPaw.11G121200 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.4e-06 55.8 93 28.0
COL.COLO4_07402 Corchorus olitorius HOM05D003999 ORTHO05D000006 2.4e-06 55.8 81 33.3
Manes.04G060201 Manihot esculenta HOM05D000024 ORTHO05D000006 2.4e-06 55.8 93 25.8
Rhsim12G0080100 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.4e-06 55.8 89 30.3
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 3.2e-06 55.5 96 29.2
Aa31sc60G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-06 55.5 83 30.1
Aqoxy3G03300 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 3.2e-06 55.5 92 28.3
Aqoxy4G00999 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 3.2e-06 55.5 86 33.7
CANSAT80G0617 Cannabis sativa HOM05D000003 ORTHO05D000007 3.2e-06 55.5 89 32.6
CANSAT80G2906 Cannabis sativa HOM05D000003 ORTHO05D000006 3.2e-06 55.5 91 29.7
Rhsim12G0079800 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.2e-06 55.5 109 27.5
Sopen00g004730 Solanum pennellii HOM05D000003 ORTHO05D000004 3.2e-06 55.5 105 25.7
Atru.chr12.1720 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-06 55.1 93 26.9
Cc01_g03150 Coffea canephora HOM05D000003 ORTHO05D000006 4.1e-06 55.1 85 31.8
Rhsim08G0091800 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.1e-06 55.1 93 31.2
Sopen00g009450 Solanum pennellii HOM05D000003 ORTHO05D000004 4.1e-06 55.1 105 26.7
Sopen05g013420 Solanum pennellii HOM05D000003 ORTHO05D000004 4.1e-06 55.1 105 26.7
Atru.chr3.1568 Acer truncatum HOM05D000003 ORTHO05D000126 5.4e-06 54.7 93 29.0
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-06 54.7 93 29.0
Aqoxy5G01605 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.4e-06 54.7 91 29.7
EL10Ac4g09271 Beta vulgaris HOM05D000003 ORTHO05D000006 5.4e-06 54.7 97 29.9
CANSAT11G0360 Cannabis sativa HOM05D000003 ORTHO05D000006 5.4e-06 54.7 92 31.5
PSO384G0449 Papaver somniferum HOM05D000003 ORTHO05D000006 5.4e-06 54.7 92 30.4
QL02p003261 Quercus lobata HOM05D000232 ORTHO05D000126 5.4e-06 54.7 92 27.2
Rhsim02G0226500 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.4e-06 54.7 90 31.1
Sopen00g004660 Solanum pennellii HOM05D000003 ORTHO05D000004 5.4e-06 54.7 105 24.8
Sopen00g010970 Solanum pennellii HOM05D000003 ORTHO05D000006 5.4e-06 54.7 105 25.7
Sopen04g018170 Solanum pennellii HOM05D000003 ORTHO05D000004 5.4e-06 54.7 105 26.7
Sopen08g014400 Solanum pennellii HOM05D000003 ORTHO05D000004 5.4e-06 54.7 105 26.7
Sopen10g008120 Solanum pennellii HOM05D000003 ORTHO05D000004 5.4e-06 54.7 105 26.7
MBI19_g00144_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 7.1e-06 54.3 103 27.2
Medtr6g463840 Medicago truncatula HOM05D000022 ORTHO05D000006 7.1e-06 54.3 88 30.7
PSO170G0824 Papaver somniferum HOM05D000003 ORTHO05D000004 7.1e-06 54.3 89 30.3
Sopen00g008680 Solanum pennellii HOM05D000003 ORTHO05D000004 7.1e-06 54.3 104 26.0
Sopen00g010250 Solanum pennellii HOM05D000003 ORTHO05D000004 7.1e-06 54.3 109 30.3
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 9.2e-06 53.9 93 29.0
Aqoxy2G01513 Aquilegia oxysepala HOM05D000024 ORTHO05D000007 9.2e-06 53.9 91 28.6
CANSAT35G0462 Cannabis sativa HOM05D000003 ORTHO05D000006 9.2e-06 53.9 106 26.4
Sopen00g004600 Solanum pennellii HOM05D000003 ORTHO05D000004 9.2e-06 53.9 106 26.4


User provided reference genes

Program Settings