Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 0.0e+00 1456.8 1034 100.0
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.3e-287 993.4 1042 76.9
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.3e-283 978.4 1039 74.2
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.4e-278 961.4 1015 69.6
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.1e-266 921.0 999 76.7
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.8e-264 914.8 999 76.5
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 3.4e-232 809.3 946 69.1
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.3e-231 807.4 1043 68.2
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.5e-230 803.1 1042 67.8
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 3.5e-229 799.3 1039 62.5
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.1e-227 794.3 1098 60.7
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.1e-225 787.7 1011 69.3
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.9e-223 779.6 1048 66.2
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.9e-222 776.9 898 73.6
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 4.2e-222 775.8 1046 68.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.8e-220 770.4 1048 66.7
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.0e-220 769.6 1045 66.9
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 5.1e-220 768.8 1037 65.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.1e-219 767.7 1037 68.2
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.5e-219 766.5 1045 62.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.7e-219 765.4 1032 64.1
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 6.9e-217 758.4 1057 64.4
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-216 757.3 1037 66.5
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.3e-215 754.2 1053 61.1
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 8.5e-215 751.5 1041 61.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 7.2e-214 748.4 1054 65.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 9.4e-214 748.0 1034 66.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.6e-213 746.1 1041 63.1
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-212 743.8 1039 65.4
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.3e-212 743.4 1040 60.3
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.9e-212 742.7 920 73.4
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 8.8e-212 741.5 1108 60.5
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-211 741.1 1033 65.9
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.5e-211 740.7 906 73.4
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 4.4e-211 739.2 1041 65.4
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.7e-211 738.8 1039 65.6
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 9.7e-211 738.0 934 70.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-210 737.6 1053 63.2
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.7e-210 736.1 1053 63.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.8e-209 733.8 897 71.7
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.4e-209 733.4 897 71.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 5.0e-207 725.7 878 72.7
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.5e-206 724.2 896 72.8
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.5e-206 723.4 849 76.7
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.7e-205 719.9 1043 64.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 4.7e-205 719.2 1037 64.5
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.8e-204 717.2 908 60.6
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 5.2e-204 715.7 919 69.3
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 4.4e-203 712.6 900 71.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 7.5e-203 711.8 1046 62.0
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.7e-202 709.5 893 73.0
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 6.3e-202 708.8 906 71.4
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 6.3e-202 708.8 896 70.0
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.8e-201 707.2 954 67.8
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.4e-201 706.8 897 70.3
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 4.1e-201 706.1 901 69.5
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.6e-200 704.1 1055 64.1
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.0e-200 703.7 895 71.7
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 3.5e-200 703.0 1035 61.1
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 5.9e-200 702.2 900 68.3
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 7.7e-200 701.8 986 67.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.0e-199 701.4 812 75.6
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.0e-199 701.4 896 68.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 3.8e-199 699.5 801 66.3
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 8.5e-199 698.4 899 69.3
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 5.5e-198 695.7 894 68.3
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 7.2e-198 695.3 1041 63.9
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 4.7e-197 692.6 887 71.0
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.0e-196 691.4 1049 59.0
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.8e-196 690.6 1037 61.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 5.2e-196 689.1 812 72.0
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 5.2e-196 689.1 1036 60.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 9.8e-195 684.9 1049 58.8
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 6.3e-194 682.2 893 68.0
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.8e-193 680.6 808 71.3
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.1e-193 679.9 914 67.8
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 4.1e-193 679.5 1030 60.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 9.1e-193 678.3 861 73.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 5.9e-192 675.6 1043 58.0
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 5.0e-191 672.5 898 70.5
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.2e-190 669.8 1043 57.6
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 6.1e-189 665.6 773 72.2
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 8.0e-189 665.2 907 62.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.4e-188 664.5 804 73.6
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 2.6e-187 660.2 776 74.6
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.7e-186 656.4 959 65.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 2.4e-185 653.7 994 58.1
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.4e-185 653.7 873 69.0
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 2.7e-184 650.2 808 73.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.3e-182 643.3 917 64.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.8e-181 640.2 907 65.9
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 3.6e-181 639.8 807 72.5
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 3.6e-181 639.8 1032 61.7
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.3e-180 637.1 807 74.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.8e-179 631.7 1024 60.9
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.2e-178 630.6 909 61.4
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 3.7e-178 629.8 896 67.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 4.1e-177 626.3 914 67.5
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 5.4e-177 625.9 936 66.2
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 7.0e-177 625.5 893 66.3
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 7.0e-177 625.5 1041 60.5
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.7e-176 623.6 910 63.7
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.6e-176 622.9 929 64.6
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 5.9e-176 622.5 893 67.6
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.0e-175 621.7 915 59.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 6.6e-175 619.0 974 64.4
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.1e-174 618.2 902 68.2
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-174 617.8 902 68.2
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.9e-174 617.5 903 67.9
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 3.3e-174 616.7 897 64.0
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 7.3e-174 615.5 889 67.6
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 6.2e-173 612.5 894 67.8
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 8.0e-173 612.1 917 61.2
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.0e-172 611.7 1041 61.3
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.0e-172 611.7 801 71.0
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.8e-172 610.9 897 64.9
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 3.1e-172 610.1 896 65.8
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.5e-166 590.5 1018 49.8
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.1e-164 583.6 919 62.0
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.3e-162 578.2 792 65.2
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.2e-161 573.5 1012 58.0
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.2e-160 571.6 970 53.1
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.7e-160 570.5 806 62.7
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.7e-160 570.5 806 62.7
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 7.8e-160 568.9 806 62.5
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.3e-159 567.4 807 63.2
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.2e-157 561.6 955 60.0
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 6.2e-157 559.3 806 62.8
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.0e-156 556.6 917 63.4
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.7e-154 551.2 879 62.3
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 7.1e-153 545.8 891 58.2
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.2e-152 545.0 886 55.9
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.6e-152 544.7 741 64.9
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.3e-151 540.8 891 58.4
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 5.1e-151 539.7 688 77.8
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.2e-149 535.0 870 63.2
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.1e-148 530.4 893 57.3
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-144 518.1 893 57.6
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 3.5e-144 516.9 806 61.0
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.0e-143 513.8 685 69.1
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 2.8e-141 507.3 998 50.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.6e-136 490.0 746 63.4
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 3.8e-130 470.3 783 49.2
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.1e-127 459.9 892 52.8
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-126 458.8 900 51.2
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.8e-124 451.4 766 57.7
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.6e-123 446.0 839 48.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.4e-122 442.6 651 75.1
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.5e-118 431.0 802 54.1
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.3e-117 426.4 836 57.2
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.9e-114 417.5 910 48.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.0e-106 392.5 910 34.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 5.0e-106 390.2 649 74.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.3e-101 375.6 489 56.4
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.2e-96 359.0 947 48.6
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-88 332.0 418 54.3
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 6.1e-88 330.1 647 58.4
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.3e-85 322.4 529 60.1
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 8.5e-82 309.7 615 61.6
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.9e-81 308.5 431 52.0
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.5e-81 308.1 743 48.9
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 5.2e-71 273.9 271 66.1
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 7.8e-67 260.0 392 49.5
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.0e-58 233.0 146 78.8
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 5.0e-58 230.7 311 77.5
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 2.2e-53 215.3 229 52.0
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 9.9e-46 189.9 355 38.9
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.1e-32 143.7 242 40.1
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 9.9e-30 136.7 81 79.0
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 2.9e-29 135.2 119 61.3
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-28 132.9 88 76.1
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.5e-25 122.1 119 54.6
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 3.5e-19 101.7 66 81.8
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.8e-15 89.4 227 82.8
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 6.4e-13 80.9 58 60.3
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-08 66.6 192 30.2


User provided reference genes

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