Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1736.1 848 100.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1387.5 871 78.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1328.9 868 73.6
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1312.0 873 73.8
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1308.9 865 72.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1288.9 870 70.9
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1288.5 868 72.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1288.1 868 71.9
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 870 71.4
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1283.5 869 71.7
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1281.2 875 70.6
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1281.2 870 71.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 865 71.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1277.7 870 71.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 870 71.4
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1267.7 871 69.7
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1265.0 865 71.0
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 878 70.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 872 71.2
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 865 70.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1258.0 868 70.4
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1257.3 865 70.4
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 865 70.4
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1255.0 877 69.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 865 70.8
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 864 70.1
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 865 70.4
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 863 70.3
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1250.0 868 70.5
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1246.9 871 68.8
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 866 69.5
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 867 69.8
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1243.8 867 69.4
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 872 69.4
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1241.1 871 68.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 870 68.7
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 869 70.1
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 874 68.9
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 872 68.9
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 866 68.2
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 868 68.1
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 866 67.4
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 865 68.3
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 868 67.9
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 871 67.7
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 865 69.2
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1219.9 861 67.6
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 863 68.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 864 68.8
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 873 67.9
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 865 68.8
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 866 68.6
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1215.3 865 68.3
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 865 68.0
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 864 68.4
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 866 68.2
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1210.7 864 68.9
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1209.5 866 68.0
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 863 68.6
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 865 67.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 864 67.1
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 864 67.6
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1205.3 864 67.9
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1204.9 866 67.7
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1204.1 884 67.0
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 866 66.7
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 864 67.4
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1196.8 868 66.7
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1195.3 875 66.6
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 890 65.7
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 867 66.9
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1191.4 868 66.1
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1189.1 865 67.5
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1178.3 865 67.2
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1172.1 868 65.3
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 868 65.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 869 64.8
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1170.6 866 65.7
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1164.8 866 65.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1164.4 866 65.2
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1163.3 866 64.8
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1163.3 866 64.9
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1162.1 866 64.8
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1160.2 864 66.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1158.3 865 64.6
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1152.9 850 66.2
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1151.3 866 64.4
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1150.6 866 64.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1150.2 863 64.5
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1144.4 826 67.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1106.3 750 71.6
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1088.2 863 61.3
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 7.3e-297 1023.8 647 74.7
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 2.2e-293 1012.3 857 58.6
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 7.8e-291 1003.8 691 69.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.7e-290 1002.7 863 55.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 8.1e-288 993.8 860 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.1e-279 966.8 872 54.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 9.9e-278 960.3 692 66.6
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.9e-274 948.3 862 54.6
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.1e-263 912.1 868 50.6
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 5.5e-204 715.3 762 47.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 6.4e-168 595.5 476 61.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-166 591.3 368 76.1
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.3e-147 528.1 460 56.3
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 4.2e-127 459.9 365 62.2
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.1e-90 339.0 307 58.3
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 8.9e-61 239.6 204 59.3
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.2e-57 229.2 175 64.6
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.1e-55 222.6 168 65.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.3e-55 220.7 173 64.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 8.9e-45 186.4 198 52.0
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.4e-36 157.5 196 49.0
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 3.5e-33 147.9 149 51.0
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.5e-31 141.7 118 61.0
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-23 116.3 90 61.1
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.1e-22 112.1 69 75.4
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.8e-21 109.0 89 59.6
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.4e-21 108.6 106 50.9
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 3.1e-21 108.2 79 68.4
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-16 92.8 60 73.3
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 6.9e-13 80.5 94 44.7
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.2e-11 75.5 300 24.0
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-10 73.2 319 25.1
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.9e-10 72.4 341 23.2
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.5e-10 72.0 274 27.0
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.0e-08 66.6 64 50.0
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 3.9e-08 64.7 84 40.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 6.7e-08 63.9 311 22.5
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.1e-07 63.2 32 81.2
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.7e-07 60.8 183 27.9
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 9.7e-07 60.1 225 26.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 2.8e-06 58.5 306 25.8
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.8e-06 57.8 232 23.3
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 6.3e-06 57.4 293 24.2
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.2e-06 57.0 201 23.9


User provided reference genes

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