Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 3.4e-179 631.7 355 100.0
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 4.4e-155 551.6 348 87.1
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 9.5e-150 533.9 352 83.2
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 4.7e-149 531.6 350 84.6
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 2.0e-147 526.2 347 78.4
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.2e-146 522.7 347 77.8
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 3.3e-142 508.8 340 77.9
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 4.0e-140 501.9 350 80.9
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 6.9e-140 501.1 340 81.8
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.1e-137 493.8 345 78.6
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 9.3e-137 490.7 355 73.2
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.5e-136 488.8 359 71.3
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 4.6e-136 488.4 357 72.3
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 7.8e-136 487.6 348 72.7
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.0e-135 487.3 348 73.0
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.7e-135 486.5 352 77.3
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 6.6e-135 484.6 357 71.7
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 8.7e-135 484.2 360 71.1
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.5e-134 483.4 336 75.9
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.3e-134 481.1 359 70.5
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 6.2e-133 478.0 343 77.0
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 8.1e-133 477.6 348 72.1
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 2.4e-132 476.1 356 69.4
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 9.0e-132 474.2 347 75.2
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 5.8e-131 471.5 358 74.3
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 2.9e-130 469.2 349 69.3
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 4.9e-130 468.4 351 69.8
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 6.4e-130 468.0 351 71.8
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.9e-129 466.5 348 76.1
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 3.2e-129 465.7 349 69.6
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 9.3e-129 464.2 325 73.5
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 7.9e-128 461.1 351 68.9
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.3e-127 460.3 348 74.7
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 3.0e-127 459.1 345 72.8
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 3.0e-127 459.1 340 70.6
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 5.1e-127 458.4 358 74.3
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.1e-127 458.4 336 77.4
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.1e-126 457.2 336 77.1
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.1e-126 457.2 346 74.0
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 3.3e-126 455.7 345 73.3
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.3e-126 455.7 346 71.4
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 4.3e-126 455.3 332 75.9
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 2.1e-125 453.0 354 68.6
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 4.8e-125 451.8 340 70.3
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 4.8e-125 451.8 348 73.6
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 8.1e-125 451.1 347 74.4
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 1.4e-124 450.3 365 71.8
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 6.9e-124 448.0 340 68.8
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.0e-123 446.4 353 67.7
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 4.5e-123 445.3 343 69.4
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.7e-122 443.4 354 70.3
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 8.4e-122 441.0 365 66.0
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.1e-121 440.7 354 70.1
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 2.5e-121 439.5 351 71.5
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 2.5e-121 439.5 346 68.5
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 4.2e-121 438.7 345 72.5
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.0e-119 434.1 318 77.0
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 3.0e-119 432.6 345 71.9
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 6.7e-119 431.4 342 67.0
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 8.7e-119 431.0 343 71.7
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.9e-118 429.9 323 71.8
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 4.3e-118 428.7 351 70.9
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 4.3e-118 428.7 338 65.1
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 2.8e-117 426.0 430 57.2
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.2e-117 424.5 348 66.7
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 2.4e-116 422.9 342 66.7
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.4e-116 422.9 303 79.9
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 6.9e-116 421.4 333 65.5
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 6.9e-116 421.4 347 64.8
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 2.0e-115 419.9 329 67.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-115 419.9 329 67.8
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.0e-115 419.9 329 67.8
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.6e-115 419.5 329 67.5
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 2.2e-114 416.4 344 63.1
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 3.8e-114 415.6 278 76.3
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 4.9e-114 415.2 344 64.0
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.1e-113 414.1 346 63.6
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.1e-113 414.1 364 66.8
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.5e-113 412.9 326 67.8
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 2.5e-113 412.9 348 70.4
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.2e-113 412.5 331 66.5
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 4.2e-113 412.1 345 64.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.5e-113 411.8 346 63.6
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 5.5e-113 411.8 346 63.6
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 5.5e-113 411.8 346 63.3
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 9.3e-113 411.0 339 67.0
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.6e-112 410.2 346 63.0
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.6e-112 410.2 395 60.3
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 6.1e-112 408.3 292 74.3
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 6.1e-112 408.3 338 70.7
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 2.3e-111 406.4 303 69.3
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 8.7e-111 404.4 321 72.6
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 2.4e-108 396.4 348 62.9
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.0e-107 393.3 347 66.3
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 4.5e-107 392.1 380 65.3
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.6e-104 383.6 345 67.5
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 2.1e-104 383.3 412 58.5
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 3.7e-101 372.5 340 65.3
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 6.3e-101 371.7 297 74.1
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.4e-100 369.8 297 66.7
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 7.7e-99 364.8 395 61.8
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.3e-98 364.0 296 65.9
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 1.3e-98 364.0 265 78.9
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.2e-98 363.2 402 54.0
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.4e-97 360.5 291 73.9
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.6e-96 357.1 349 55.3
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.5e-91 340.5 229 75.5
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 2.2e-90 336.7 248 69.4
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.5e-86 323.9 440 45.7
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.3e-84 315.5 406 50.0
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 1.7e-82 310.5 244 75.0
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.6e-80 303.9 237 67.9
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 2.3e-79 300.1 235 68.1
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 3.0e-79 299.7 253 68.4
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.8e-79 298.5 233 72.1
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 3.6e-72 276.2 238 66.8
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.0e-71 274.6 302 53.6
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.7e-69 267.3 345 46.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 2.2e-69 266.9 323 46.7
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 4.5e-67 259.2 204 63.7
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.3e-66 257.7 238 56.7
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 1.5e-65 254.2 200 76.0
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.6e-64 250.8 223 58.3
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.5e-62 244.2 356 42.1
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.7e-53 214.2 148 70.3
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 2.3e-47 193.7 145 65.5
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 6.8e-47 192.2 170 74.1
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.9e-45 186.0 129 72.1
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-44 183.7 144 72.9
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 2.1e-43 180.6 203 52.2
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.0e-34 151.8 123 82.9
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.9e-33 147.5 309 33.3
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 2.3e-26 124.0 106 67.9
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 9.6e-25 118.6 98 67.3
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.3e-24 118.2 182 46.2
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 4.8e-24 116.3 234 35.5
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 5.4e-20 102.8 101 76.2
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 1.6e-19 101.3 78 66.7
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 7.3e-17 92.4 99 44.4
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 3.4e-14 83.6 83 56.6
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 4.9e-13 79.7 53 77.4
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 4.2e-12 76.6 50 78.0
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.3e-10 71.6 57 50.9
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 2.3e-10 70.9 48 77.1
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 5.6e-09 66.2 72 41.7
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 1.3e-08 65.1 56 50.0
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 1.4e-07 61.6 44 70.5
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 6.9e-07 59.3 47 53.2


User provided reference genes

Program Settings