Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1931.0 992 100.0
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1644.0 992 84.3
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1621.7 992 82.5
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1550.0 971 81.5
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1535.8 992 78.0
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1530.8 993 78.1
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1523.5 992 77.0
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1521.5 993 76.7
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1509.2 992 77.8
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1506.9 1017 76.9
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1497.6 993 75.2
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1497.3 993 77.2
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1497.3 995 76.5
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1494.9 993 75.2
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1492.2 994 76.3
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1491.9 992 74.8
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1485.3 992 75.5
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1484.9 992 75.0
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1484.5 982 75.5
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1481.8 982 75.1
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1481.5 992 75.1
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1478.0 992 76.4
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1476.8 971 77.8
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1470.7 989 74.2
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1469.9 992 74.9
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1469.1 992 75.4
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1468.8 992 74.9
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1468.8 993 74.1
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1466.8 996 75.3
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1464.9 994 74.4
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1464.5 992 75.8
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1460.3 992 74.0
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1458.7 992 73.9
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1458.0 992 74.0
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1457.2 993 73.4
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1456.8 992 74.7
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1453.3 992 72.8
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1453.0 992 73.9
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1453.0 993 74.1
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1451.0 997 73.2
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1450.3 992 74.3
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1450.3 992 74.6
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 992 75.3
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1442.9 993 73.5
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1442.6 995 73.6
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1442.6 993 73.6
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1441.4 992 75.1
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1441.0 1076 69.0
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1440.2 1006 73.2
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1439.5 992 72.6
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1439.1 987 73.9
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1436.0 993 72.9
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1435.2 994 73.3
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1434.5 994 73.7
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 999 74.2
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 995 73.0
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1430.2 992 72.8
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1429.8 992 72.0
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1429.8 993 72.8
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1428.7 992 72.8
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1422.1 1004 71.5
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1421.0 992 72.0
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1413.7 962 73.5
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1410.2 993 71.2
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1409.8 965 73.4
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1409.4 993 71.6
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1409.0 992 71.4
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1403.3 992 70.3
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1403.3 992 72.9
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1400.6 964 74.9
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 994 72.2
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 992 70.4
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1389.4 993 72.2
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1389.0 992 69.8
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1385.5 899 77.8
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1384.0 998 70.6
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1376.7 992 69.4
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1376.3 995 70.9
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1373.2 997 70.1
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1372.8 994 70.8
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1368.2 992 69.1
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1365.1 992 69.5
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1359.4 982 69.9
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1359.4 982 69.9
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1358.2 964 72.3
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1335.9 992 69.1
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1333.9 971 69.3
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1333.5 995 69.7
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1329.7 920 72.9
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1328.9 995 67.6
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1327.8 997 68.2
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1327.4 995 67.5
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1324.3 994 67.5
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1323.1 941 71.9
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 995 67.5
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1316.6 1027 66.4
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1315.1 994 68.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1297.7 992 67.5
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 992 64.7
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1270.8 965 67.5
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1206.0 914 68.9
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1182.9 864 71.3
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1152.5 1000 61.1
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1131.7 992 58.6
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 2.0e-306 1055.8 726 74.2
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 7.2e-296 1020.8 914 59.8
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 9.4e-296 1020.4 1001 53.3
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 1.4e-294 1016.5 1000 53.5
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 6.7e-294 1014.2 1000 52.3
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 3.7e-292 1008.4 1000 52.9
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 4.2e-288 995.0 1001 51.3
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.1e-271 939.5 613 78.0
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.0e-270 937.2 743 65.1
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 8.3e-268 927.5 600 78.5
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 5.8e-261 904.8 844 57.1
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.8e-254 883.2 807 56.0
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 3.1e-254 882.5 986 47.8
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 5.1e-249 865.1 609 71.4
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 6.9e-214 748.4 915 43.6
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 3.9e-209 732.6 1081 38.4
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 2.0e-181 640.6 427 74.9
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 9.5e-147 525.4 304 84.5
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 8.3e-143 512.3 314 78.7
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.0e-140 505.4 358 70.4
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 4.6e-125 453.4 1194 29.3
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.8e-95 354.0 264 66.3
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.8e-95 354.0 264 66.3
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 3.7e-82 310.8 1080 27.3
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.8e-55 221.1 240 48.8
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 2.7e-32 145.2 946 21.1
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 3.5e-32 144.8 145 51.0
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.5e-30 138.7 122 63.1
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 7.3e-30 137.1 109 59.6
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 5.2e-28 131.0 144 48.6
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 2.7e-24 118.6 85 64.7
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.1e-17 94.0 64 71.9
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 6.6e-07 60.8 49 57.1
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 7.3e-06 57.4 45 68.9
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 7.3e-06 57.4 45 68.9


User provided reference genes

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