Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g38062 Nelumbo nucifera HOM05D002322 ORTHO05D002536 4.3e-21 103.6 48 100.0
Nn2g12870 Nelumbo nucifera HOM05D002322 ORTHO05D002536 2.2e-17 91.3 47 89.4
Gohir.D01G079100 Gossypium hirsutum HOM05D002322 ORTHO05D002536 8.4e-17 89.4 47 83.0
Gorai.002G103700 Gossypium raimondii HOM05D002322 ORTHO05D002536 8.4e-17 89.4 47 83.0
Gohir.A01G094600 Gossypium hirsutum HOM05D002322 ORTHO05D002536 1.1e-16 89.0 47 83.0
Cpa.g.sc12.93 Carica papaya HOM05D002322 ORTHO05D002536 1.4e-16 88.6 47 80.9
Duzib268G1656 Durio zibethinus HOM05D002322 ORTHO05D002536 1.9e-16 88.2 47 80.9
Prupe.6G031300 Prunus persica HOM05D002322 ORTHO05D002536 3.2e-16 87.4 47 80.9
Duzib213G0142 Durio zibethinus HOM05D002322 ORTHO05D002536 4.2e-16 87.0 47 80.9
Atru.chr2.3867 Acer truncatum HOM05D002322 ORTHO05D002536 5.5e-16 86.7 47 78.7
MD03G1039200 Malus domestica HOM05D002322 ORTHO05D002536 5.5e-16 86.7 47 78.7
CSS0034767 Camellia sinensis var. sinensis HOM05D002322 ORTHO05D002536 9.3e-16 85.9 47 78.7
FAN11G3485 Fragaria x ananassa HOM05D002322 ORTHO05D002536 9.3e-16 85.9 47 76.6
TAR629G2393 Trochodendron aralioides HOM05D002322 ORTHO05D002536 9.3e-16 85.9 47 78.7
Actinidia10578 Actinidia chinensis HOM05D002322 ORTHO05D002536 1.2e-15 85.5 47 78.7
Dinv40893 Davidia involucrata HOM05D000015 ORTHO05D002536 1.6e-15 85.1 47 78.7
Hma1.2p1_0193F.1_g084070 Hydrangea macrophylla HOM05D002322 ORTHO05D002536 1.6e-15 85.1 47 78.7
FvH4_3g42042 Fragaria vesca HOM05D002322 ORTHO05D002536 2.1e-15 84.7 47 74.5
FAN16G2567 Fragaria x ananassa HOM05D002322 ORTHO05D002536 2.1e-15 84.7 47 74.5
FAN21G3950 Fragaria x ananassa HOM05D002322 ORTHO05D002536 2.1e-15 84.7 47 74.5
FAN25G3761 Fragaria x ananassa HOM05D002322 ORTHO05D002536 2.1e-15 84.7 47 74.5
Glyma.18G072800 Glycine max HOM05D002322 ORTHO05D002536 2.1e-15 84.7 47 78.7
MD11G1039500 Malus domestica HOM05D002322 ORTHO05D002536 2.1e-15 84.7 47 76.6
Manes.05G206900 Manihot esculenta HOM05D002322 ORTHO05D002536 2.1e-15 84.7 47 78.7
COL.COLO4_07757 Corchorus olitorius HOM05D002322 ORTHO05D002536 2.7e-15 84.3 44 84.1
RcHm_v2.0_Chr5g0075261 Rosa chinensis HOM05D002322 ORTHO05D002536 2.7e-15 84.3 47 72.3
Thecc.07G005800 Theobroma cacao HOM05D002322 ORTHO05D002536 2.7e-15 84.3 47 76.6
arahy.Tifrunner.gnm1.ann1.4T73SR Arachis hypogaea HOM05D002322 ORTHO05D002536 3.5e-15 84.0 47 78.7
arahy.Tifrunner.gnm1.ann1.Z47KWR Arachis hypogaea HOM05D002322 ORTHO05D002536 3.5e-15 84.0 47 78.7
Lalb_Chr18g0050111 Lupinus albus HOM05D002322 ORTHO05D002536 3.5e-15 84.0 47 78.7
Actinidia30370 Actinidia chinensis HOM05D002322 ORTHO05D002536 4.6e-15 83.6 47 74.5
QL08p001911 Quercus lobata HOM05D002322 ORTHO05D002536 6.0e-15 83.2 47 78.7
TAR627G0478 Trochodendron aralioides HOM05D002322 ORTHO05D002536 6.0e-15 83.2 47 78.7
CANSAT11G2409 Cannabis sativa HOM05D002322 ORTHO05D002536 7.9e-15 82.8 47 76.6
VMungo0540G0693 Vigna mungo HOM05D002322 ORTHO05D002536 7.9e-15 82.8 47 78.7
Lj6g0012200 Lotus japonicus HOM05D002322 ORTHO05D002536 1.0e-14 82.4 47 76.6
Phvul.006G059800 Phaseolus vulgaris HOM05D002322 ORTHO05D002536 1.0e-14 82.4 47 76.6
CSS0047092 Camellia sinensis var. sinensis HOM05D002322 ORTHO05D002536 1.3e-14 82.0 47 74.5
Ciclev10008898m.g Citrus clementina HOM05D002322 ORTHO05D002536 1.3e-14 82.0 47 74.5
GSVIVG01014790001 Vitis vinifera HOM05D002322 ORTHO05D002536 1.3e-14 82.0 47 76.6
Cfa016932 Carpinus fangiana HOM05D002322 ORTHO05D002536 1.8e-14 81.6 47 76.6
CiPaw.12G141500 Carya illinoinensis HOM05D002322 ORTHO05D002536 1.8e-14 81.6 47 72.3
Haze_09889 Corylus avellana HOM05D002322 ORTHO05D002536 1.8e-14 81.6 47 76.6
Potri.001G468700 Populus trichocarpa HOM05D002322 ORTHO05D002536 1.8e-14 81.6 47 76.6
vmacro11626 Vaccinium macrocarpon HOM05D002322 ORTHO05D002536 1.8e-14 81.6 47 74.5
Hma1.2p1_0321F.1_g124140 Hydrangea macrophylla HOM05D002322 ORTHO05D002536 2.3e-14 81.3 47 72.3
Lj1A897T42 Lonicera japonica HOM05D002322 ORTHO05D002536 2.3e-14 81.3 47 76.6
Sopen07g034130 Solanum pennellii HOM05D002322 ORTHO05D002536 2.3e-14 81.3 47 76.6
PGSC0003DMG400022260 Solanum tuberosum HOM05D002322 ORTHO05D002536 2.3e-14 81.3 47 76.6
CAN.G623.51 Capsicum annuum HOM05D002322 ORTHO05D002536 3.0e-14 80.9 47 74.5
Migut.H01730 Erythranthe guttata HOM05D002322 ORTHO05D002536 3.0e-14 80.9 47 74.5
Lalb_Chr20g0115321 Lupinus albus HOM05D002322 ORTHO05D002536 3.0e-14 80.9 46 78.3
PSO017G3258 Papaver somniferum HOM05D002322 ORTHO05D002536 3.0e-14 80.9 43 79.1
PSO478G0932 Papaver somniferum HOM05D002322 ORTHO05D002536 3.0e-14 80.9 43 79.1
PGR083G2282 Punica granatum HOM05D002322 ORTHO05D002536 3.0e-14 80.9 46 78.3
Solyc07g065930.3 Solanum lycopersicum HOM05D002322 ORTHO05D002536 3.0e-14 80.9 47 74.5
Dinv10374 Davidia involucrata HOM05D002322 ORTHO05D002536 3.9e-14 80.5 46 78.3
Oeu013020.1 Olea europaea HOM05D002322 ORTHO05D002536 3.9e-14 80.5 47 72.3
Oeu049454.1 Olea europaea HOM05D002322 ORTHO05D002536 3.9e-14 80.5 47 72.3
Sed0020762 Sechium edule HOM05D002322 ORTHO05D002536 3.9e-14 80.5 47 74.5
MSTRG.14509 Avicennia marina HOM05D002322 ORTHO05D002536 5.1e-14 80.1 47 72.3
EL10Ac4g07511 Beta vulgaris HOM05D002322 ORTHO05D002536 5.1e-14 80.1 47 74.5
Sabra16G0318000 Salix brachista HOM05D002322 ORTHO05D002536 6.7e-14 79.7 47 74.5
CiPaw.11G208400 Carya illinoinensis HOM05D002322 ORTHO05D002536 8.7e-14 79.3 47 74.5
AUR62035640 Chenopodium quinoa HOM05D002322 ORTHO05D002536 1.1e-13 79.0 47 72.3
MSTRG.7028 Avicennia marina HOM05D002322 ORTHO05D002536 1.5e-13 78.6 47 74.5
Cc05_g15470 Coffea canephora HOM05D002322 ORTHO05D002536 1.5e-13 78.6 47 74.5
Peaxi162Scf00232g00035 Petunia axillaris HOM05D002322 ORTHO05D002536 1.5e-13 78.6 47 72.3
Eucgr.F02008 Eucalyptus grandis HOM05D002322 ORTHO05D002536 2.5e-13 77.8 46 71.7
Nn1g07607 Nelumbo nucifera HOM05D002322 ORTHO05D002536 2.5e-13 77.8 47 76.6
Nitab4.5_0000152g0200 Nicotiana tabacum HOM05D002322 ORTHO05D002536 2.5e-13 77.8 47 72.3
MBI15_g00871_MAGBIO Magnolia biondii HOM05D002322 ORTHO05D002536 3.3e-13 77.4 47 70.2
Nitab4.5_0001303g0150 Nicotiana tabacum HOM05D002322 ORTHO05D002536 3.3e-13 77.4 47 72.3
Aqoxy1G02820 Aquilegia oxysepala HOM05D002322 ORTHO05D002536 4.3e-13 77.0 47 72.3
AUR62017164 Chenopodium quinoa HOM05D002322 ORTHO05D002536 4.3e-13 77.0 47 70.2
Sc07g0002260 Simmondsia chinensis HOM05D002322 ORTHO05D002536 1.3e-12 75.5 46 73.9
SGA_v2.0_scaffold42G15940 Striga asiatica HOM05D002322 ORTHO05D002536 2.8e-12 74.3 47 68.1
TWI38G0073 Tripterygium wilfordii HOM05D002322 ORTHO05D002536 2.8e-12 74.3 48 68.8
CsaV3_7G021390 Cucumis sativus L. HOM05D002322 ORTHO05D002536 3.7e-12 73.9 47 66.0
CDE10G0929 Ceratophyllum demersum HOM05D002322 ORTHO05D002536 4.8e-12 73.6 47 66.0
Gohir.A04G003400 Gossypium hirsutum HOM05D002322 ORTHO05D002536 6.2e-12 73.2 47 72.3
Gohir.D05G386300 Gossypium hirsutum HOM05D002322 ORTHO05D002536 6.2e-12 73.2 47 72.3
Gorai.009G453000 Gossypium raimondii HOM05D002322 ORTHO05D002536 6.2e-12 73.2 47 72.3
Carub.0001s4432 Capsella rubella HOM05D002322 ORTHO05D002536 8.1e-12 72.8 48 66.7
Lj8A181T58 Lonicera japonica HOM05D002322 ORTHO05D002536 8.1e-12 72.8 47 66.0
AL1G63870 Arabidopsis lyrata HOM05D002322 ORTHO05D002536 1.1e-11 72.4 48 62.5
DCAR_013773 Daucus carota HOM05D002322 ORTHO05D002536 1.4e-11 72.0 47 68.1
HanXRQChr11g0334631 Helianthus annuus HOM05D002322 ORTHO05D002536 1.8e-11 71.6 46 71.7
Aa31LG10G430 Aethionema arabicum HOM05D002322 ORTHO05D002536 4.0e-11 70.5 48 60.4
Ca_14846_v3 Cicer arietinum L. HOM05D002322 ORTHO05D002536 4.0e-11 70.5 44 68.2
THA.LOC104822712 Tarenaya hassleriana HOM05D002322 ORTHO05D002536 4.0e-11 70.5 47 59.6
TPR.G17931 Trifolium pratense HOM05D002322 ORTHO05D002536 4.0e-11 70.5 44 68.2
HanXRQChr13g0409131 Helianthus annuus HOM05D002322 ORTHO05D002536 5.3e-11 70.1 46 67.4
TWI39G0044 Tripterygium wilfordii HOM05D002322 ORTHO05D002536 6.9e-11 69.7 48 62.5
AT1G55760 Arabidopsis thaliana HOM05D002322 ORTHO05D002536 9.0e-11 69.3 48 60.4
Thhalv10011642m.g Eutrema salsugineum HOM05D002322 ORTHO05D002536 9.0e-11 69.3 48 60.4
Sp1g41340 Schrenkiella parvula HOM05D002322 ORTHO05D002536 9.0e-11 69.3 48 60.4
CARHR045440 Cardamine hirsuta HOM05D002322 ORTHO05D002536 1.5e-10 68.6 48 60.4
ECA240G2657 Erigeron canadensis HOM05D002322 ORTHO05D002536 1.5e-10 68.6 46 69.6
BcaC01g01565 Brassica carinata HOM05D002322 ORTHO05D002536 3.4e-10 67.4 48 56.2
A08p00320 Brassica napus HOM05D002322 ORTHO05D002536 3.4e-10 67.4 48 56.2
C03p93190 Brassica napus HOM05D002322 ORTHO05D002536 3.4e-10 67.4 48 56.2
BolC3t21617H Brassica oleracea HOM05D002322 ORTHO05D002536 3.4e-10 67.4 48 56.2
BraA08t32090Z Brassica rapa HOM05D002322 ORTHO05D002536 3.4e-10 67.4 48 56.2
Medtr3g061090 Medicago truncatula HOM05D002322 ORTHO05D002536 4.5e-10 67.0 44 65.9
HanXRQChr03g0077751 Helianthus annuus HOM05D002322 ORTHO05D002536 3.8e-09 63.9 46 63.0
HanXRQChr15g0464791 Helianthus annuus HOM05D002322 ORTHO05D002536 3.8e-09 63.9 46 63.0
Glyma.08G337900 Glycine max HOM05D002322 ORTHO05D002536 1.9e-08 61.6 46 63.0
CARHR022160 Cardamine hirsuta HOM05D002322 ORTHO05D002536 3.2e-08 60.8 41 58.5
Cpa.g.sc418.4 Carica papaya HOM05D002322 ORTHO05D002536 1.2e-07 58.9 47 55.3
Aa31LG7G5760 Aethionema arabicum HOM05D002322 ORTHO05D002536 1.6e-07 58.5 41 53.7
Hund17296 Selenicereus undatus HOM05D002322 ORTHO05D002536 2.1e-07 58.2 41 58.5
BcaB07g32177 Brassica carinata HOM05D002322 ORTHO05D002536 2.7e-07 57.8 41 53.7
BcaC05g26100 Brassica carinata HOM05D002322 ORTHO05D002536 2.7e-07 57.8 41 53.7
A06p17890 Brassica napus HOM05D002322 ORTHO05D002536 2.7e-07 57.8 41 53.7
C05p20790 Brassica napus HOM05D002322 ORTHO05D002536 2.7e-07 57.8 41 53.7
BolC5t30778H Brassica oleracea HOM05D002322 ORTHO05D002536 2.7e-07 57.8 41 53.7
BraA06t24879Z Brassica rapa HOM05D002322 ORTHO05D002536 2.7e-07 57.8 41 53.7
AL1G34980 Arabidopsis lyrata HOM05D002322 ORTHO05D002536 3.5e-07 57.4 41 51.2
AT1G21780 Arabidopsis thaliana HOM05D002322 ORTHO05D002536 3.5e-07 57.4 41 51.2
Carub.0001s2124 Capsella rubella HOM05D002322 ORTHO05D002536 3.5e-07 57.4 41 51.2
Thhalv10008190m.g Eutrema salsugineum HOM05D002322 ORTHO05D002536 3.5e-07 57.4 41 51.2
Sp1g19340 Schrenkiella parvula HOM05D002322 ORTHO05D002536 3.5e-07 57.4 41 51.2
unitig_21.g20268 Utricularia gibba HOM05D002322 ORTHO05D002536 3.5e-07 57.4 47 57.4
ATR0751G123 Amborella trichopoda HOM05D002322 ORTHO05D002536 6.0e-07 56.6 42 54.8
Aqoxy6G00231 Aquilegia oxysepala HOM05D002322 ORTHO05D002536 6.0e-07 56.6 41 58.5
LjContig00081g0014690 Lotus japonicus HOM05D002322 ORTHO05D002536 6.0e-07 56.6 44 56.8
FAN24G2884 Fragaria x ananassa HOM05D002322 ORTHO05D002536 7.9e-07 56.2 44 54.5
EL10Ac1g01021 Beta vulgaris HOM05D002322 ORTHO05D002536 1.0e-06 55.8 41 56.1
Dinv27307 Davidia involucrata HOM05D002322 ORTHO05D002536 1.0e-06 55.8 46 56.5
Eucgr.F04351 Eucalyptus grandis HOM05D002322 ORTHO05D002536 1.0e-06 55.8 41 48.8
Ciclev10001829m.g Citrus clementina HOM05D002322 ORTHO05D002536 1.3e-06 55.5 41 58.5
Medtr5g096700 Medicago truncatula HOM05D002322 ORTHO05D002536 1.3e-06 55.5 44 54.5
Nn5g28312 Nelumbo nucifera HOM05D002322 ORTHO05D002536 1.3e-06 55.5 41 53.7
Actinidia02622 Actinidia chinensis HOM05D002322 ORTHO05D002536 1.8e-06 55.1 41 53.7
Actinidia21327 Actinidia chinensis HOM05D002322 ORTHO05D002536 1.8e-06 55.1 41 53.7
Manes.02G164100 Manihot esculenta HOM05D002322 ORTHO05D002536 1.8e-06 55.1 41 56.1
Atru.chr13.1489 Acer truncatum HOM05D002322 ORTHO05D002536 2.3e-06 54.7 41 53.7
AUR62014330 Chenopodium quinoa HOM05D002322 ORTHO05D002536 2.3e-06 54.7 41 53.7
AUR62019073 Chenopodium quinoa HOM05D002322 ORTHO05D002536 2.3e-06 54.7 41 53.7
FvH4_2g27041 Fragaria vesca HOM05D002322 ORTHO05D002536 2.3e-06 54.7 44 52.3
HanXRQChr11g0325981 Helianthus annuus HOM05D002322 ORTHO05D002536 2.3e-06 54.7 41 58.5
Rhsim06G0103000 Rhododendron simsii HOM05D002322 ORTHO05D002536 2.3e-06 54.7 41 56.1
CiPaw.05G220900 Carya illinoinensis HOM05D002322 ORTHO05D002536 3.0e-06 54.3 44 52.3
THA.LOC104813656 Tarenaya hassleriana HOM05D002322 ORTHO05D002536 3.0e-06 54.3 41 53.7
Ah.05g171060 Amaranthus hybridus HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 51.2
Ah.14g078800 Amaranthus hybridus HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 51.2
CSS0036874 Camellia sinensis var. sinensis HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 56.1
Haze_00432 Corylus avellana HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 53.7
Duzib093G0090 Durio zibethinus HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 56.1
FAN15G2425 Fragaria x ananassa HOM05D002322 ORTHO05D002536 3.9e-06 53.9 44 52.3
FAN27G1018 Fragaria x ananassa HOM05D002322 ORTHO05D002536 3.9e-06 53.9 44 52.3
HanXRQChr05g0160231 Helianthus annuus HOM05D002322 ORTHO05D002536 3.9e-06 53.9 48 62.5
Hma1.2p1_0129F.1_g060260 Hydrangea macrophylla HOM05D002322 ORTHO05D002536 3.9e-06 53.9 46 52.2
MBI16_g07660_MAGBIO Magnolia biondii HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 53.7
Potri.002G082800 Populus trichocarpa HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 56.1
RcHm_v2.0_Chr6g0295921 Rosa chinensis HOM05D002322 ORTHO05D002536 3.9e-06 53.9 44 50.0
TWI32G0225 Tripterygium wilfordii HOM05D002322 ORTHO05D002536 3.9e-06 53.9 41 53.7
CsaV3_6G034410 Cucumis sativus L. HOM05D002322 ORTHO05D002536 5.1e-06 53.5 41 56.1
QL09p034417 Quercus lobata HOM05D002322 ORTHO05D002536 5.1e-06 53.5 41 53.7
QL09p034439 Quercus lobata HOM05D002322 ORTHO05D002536 5.1e-06 53.5 41 53.7
Ca_12630_v3 Cicer arietinum L. HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 56.1
MELO3C010619.2 Cucumis melo HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 56.1
Duzib116G0306 Durio zibethinus HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 53.7
ECA232G4152 Erigeron canadensis HOM05D004057 ORTHO05D004805 6.7e-06 53.1 41 56.1
Lalb_Chr08g0241291 Lupinus albus HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 53.7
Oeu059438.1 Olea europaea HOM05D002322 ORTHO05D002536 6.7e-06 53.1 44 47.7
PSO170G2223 Papaver somniferum HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 48.8
PSO528G0053 Papaver somniferum HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 48.8
Prupe.1G495000 Prunus persica HOM05D002322 ORTHO05D002536 6.7e-06 53.1 44 50.0
Prupe.1G495100 Prunus persica HOM05D002322 ORTHO05D002536 6.7e-06 53.1 44 50.0
SEGI_30836 Sequoiadendron giganteum HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 46.3
GSVIVG01008860001 Vitis vinifera HOM05D002322 ORTHO05D002536 6.7e-06 53.1 41 53.7
Hma1.2p1_0063F.1_g034460 Hydrangea macrophylla HOM05D002322 ORTHO05D002536 8.7e-06 52.8 27 88.9
Lsat_1_v5_gn_4_135241 Lactuca sativa HOM05D002322 ORTHO05D002536 8.7e-06 52.8 41 56.1
Lsat_1_v5_gn_5_701 Lactuca sativa HOM05D002322 ORTHO05D002536 8.7e-06 52.8 49 57.1
Lalb_Chr11g0066071 Lupinus albus HOM05D002322 ORTHO05D002536 8.7e-06 52.8 41 53.7
MD08G1162000 Malus domestica HOM05D002322 ORTHO05D002536 8.7e-06 52.8 41 51.2
unitig_749.g13932 Utricularia gibba HOM05D002322 ORTHO05D002536 8.7e-06 52.8 44 52.3


User provided reference genes

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