Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 5.2e-293 1010.4 532 100.0
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 4.4e-215 751.5 527 78.7
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 6.5e-211 737.6 525 76.0
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 9.4e-210 733.8 526 74.7
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.1e-209 732.6 525 75.8
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.1e-209 732.6 525 75.0
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.6e-209 731.9 525 74.5
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 6.1e-209 731.1 525 75.4
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.8e-208 727.2 525 74.3
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.5e-207 726.5 525 75.0
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.5e-207 726.5 525 75.0
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 4.4e-207 724.9 526 74.3
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.3e-206 723.4 525 75.2
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.2e-206 722.6 525 74.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.8e-206 722.2 525 71.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.8e-206 722.2 525 74.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 8.3e-206 720.7 525 75.2
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.1e-205 720.3 526 75.5
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.8e-205 719.5 525 74.9
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 3.1e-205 718.8 525 75.2
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 4.1e-205 718.4 525 75.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 5.3e-205 718.0 525 75.4
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 7.0e-205 717.6 525 73.9
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.0e-204 716.1 525 75.6
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.5e-204 715.3 552 67.4
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.7e-203 713.0 526 74.9
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.7e-203 713.0 522 74.9
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 8.5e-203 710.7 512 75.2
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.5e-202 709.9 525 74.7
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.7e-201 705.7 525 74.9
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 8.0e-201 704.1 525 73.9
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.0e-200 703.7 526 72.8
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 5.9e-196 688.0 525 71.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.9e-196 688.0 525 73.3
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.1e-194 683.7 506 75.5
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.3e-194 682.2 532 69.7
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 3.3e-194 682.2 525 73.1
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 7.2e-194 681.0 509 74.5
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 3.6e-193 678.7 525 70.7
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.3e-192 676.0 531 72.3
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.0e-192 675.2 548 70.6
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 6.8e-192 674.5 525 70.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 8.9e-192 674.1 468 73.3
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 8.9e-192 674.1 527 70.6
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 7.5e-191 671.0 525 72.8
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.9e-190 668.3 527 71.7
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.4e-189 666.8 525 72.4
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.8e-189 666.4 525 71.2
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.2e-188 663.7 531 70.8
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.5e-188 661.8 525 69.0
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.9e-188 661.4 525 68.8
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 7.8e-188 661.0 482 74.1
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.0e-187 660.6 645 61.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 5.6e-186 654.8 525 71.6
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.0e-183 646.4 528 69.9
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 9.8e-183 644.0 524 70.0
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 4.9e-182 641.7 446 74.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 4.9e-182 641.7 527 69.3
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.9e-181 639.8 520 70.2
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.2e-180 637.1 525 69.1
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.7e-180 636.0 526 69.0
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.7e-180 636.0 525 69.5
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.0e-179 634.0 531 69.3
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.3e-179 633.6 445 71.5
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.9e-178 629.8 525 68.8
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.9e-178 629.8 526 69.0
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.6e-178 628.2 495 69.9
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.3e-176 622.9 512 68.9
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.2e-175 620.5 524 68.3
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.6e-175 619.4 512 68.8
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.3e-174 617.1 512 68.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.2e-174 616.3 497 68.8
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 2.9e-174 615.9 475 70.9
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.9e-174 615.9 512 68.8
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.7e-174 615.5 512 68.4
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 7.1e-173 611.3 512 67.6
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 7.1e-173 611.3 512 67.6
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 7.1e-173 611.3 512 67.6
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 9.2e-173 610.9 512 67.4
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.7e-172 609.4 512 68.4
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-171 606.3 512 67.6
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.3e-171 606.3 512 67.6
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 3.9e-171 605.5 518 68.0
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.5e-170 603.6 509 68.6
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 3.3e-170 602.4 512 66.8
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 5.6e-170 601.7 525 66.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 7.3e-170 601.3 516 64.0
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-169 597.8 512 67.0
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 8.1e-169 597.8 512 67.0
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 3.3e-162 575.9 468 65.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 8.1e-161 571.2 589 57.0
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 5.2e-160 568.5 528 63.3
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 8.4e-158 561.2 517 62.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.0e-152 542.3 528 58.1
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 8.4e-150 534.6 455 63.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 3.2e-149 532.7 472 65.0
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.8e-145 519.6 420 67.1
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.8e-145 519.6 525 60.8
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 4.8e-145 518.8 500 60.2
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-144 517.3 420 64.5
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 2.1e-140 503.4 451 64.7
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.7e-140 503.1 544 58.1
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-137 493.8 569 51.7
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 4.0e-136 489.2 307 85.3
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 2.5e-130 469.9 541 51.4
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 3.3e-122 443.0 507 56.0
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.9e-117 427.2 289 82.7
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.3e-115 420.2 519 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 4.5e-111 406.0 571 46.8
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.2e-109 399.4 351 62.1
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 3.6e-108 396.4 525 50.9
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.0e-102 378.3 262 80.5
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.3e-102 377.9 421 54.2
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.7e-97 359.8 516 45.3
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.2e-94 350.5 539 45.1
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.3e-78 297.4 377 47.2
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.4e-74 283.1 335 48.4
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.3e-70 271.6 180 87.8
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.4e-64 249.6 284 48.2
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.8e-63 245.7 199 61.3
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-60 235.7 324 44.8
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 5.8e-58 229.6 162 87.7
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.7e-57 228.0 216 54.6
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.4e-56 224.9 162 88.3
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 6.0e-55 219.5 152 78.9
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.1e-44 184.5 167 55.1
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.0e-42 177.9 102 94.1
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 5.8e-42 176.4 134 88.8
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.4e-40 171.0 276 40.9
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.6e-38 162.9 80 95.0
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.6e-38 162.9 122 64.8
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.1e-36 156.0 149 75.8
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.1e-27 129.0 139 59.7
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 2.2e-25 121.3 91 70.3
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-23 115.5 89 74.2
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 3.9e-22 110.5 59 88.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 9.6e-21 105.9 73 79.5
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 6.2e-20 103.2 311 28.3
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.4e-16 92.0 73 64.4
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.6e-15 88.6 63 68.3
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 2.7e-15 87.8 91 45.1
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 2.7e-15 87.8 91 45.1
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 7.9e-15 86.3 51 82.4
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.7e-12 77.4 135 36.3
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.4e-11 75.5 53 66.0
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 1.3e-09 68.9 168 29.8
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.1e-08 65.9 71 80.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.9e-08 65.1 62 51.6
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.9e-08 65.1 62 51.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 5.5e-08 63.5 62 53.2
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 4.6e-07 60.5 32 93.8
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.3e-06 58.9 36 83.3
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.8e-06 58.5 58 56.9
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 2.3e-06 58.2 35 74.3
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 3.0e-06 57.8 34 85.3
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 6.7e-06 56.6 114 36.8


User provided reference genes

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