Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 2.3e-34 148.3 72 100.0
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 1.9e-20 102.1 69 69.6
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 3.2e-20 101.3 72 70.8
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 4.2e-20 100.9 77 64.9
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 2.1e-19 98.6 76 67.1
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 2.7e-19 98.2 76 65.8
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 6.1e-19 97.1 72 66.7
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.8e-18 95.5 72 62.5
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 1.8e-18 95.5 75 65.3
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.3e-18 95.1 72 62.5
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 2.3e-18 95.1 67 68.7
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 3.0e-18 94.7 75 65.3
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 3.9e-18 94.4 72 61.1
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 3.9e-18 94.4 72 61.1
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 5.1e-18 94.0 73 61.6
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 6.7e-18 93.6 72 61.1
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 6.7e-18 93.6 74 68.9
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 8.7e-18 93.2 76 63.2
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 8.7e-18 93.2 71 66.2
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 8.7e-18 93.2 77 66.2
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 1.1e-17 92.8 73 60.3
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 1.1e-17 92.8 73 60.3
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 1.1e-17 92.8 73 60.3
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.5e-17 92.4 73 60.3
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.5e-17 92.4 73 60.3
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 1.9e-17 92.0 73 58.9
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 9.7e-17 89.7 74 60.8
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 9.7e-17 89.7 73 58.9
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 9.7e-17 89.7 72 62.5
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.3e-16 89.4 59 74.6
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 1.6e-16 89.0 72 61.1
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 2.2e-16 88.6 70 64.3
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.8e-16 88.2 74 63.5
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.8e-16 88.2 61 70.5
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 2.8e-16 88.2 77 62.3
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 2.8e-16 88.2 72 59.7
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 2.8e-16 88.2 74 63.5
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 3.7e-16 87.8 67 64.2
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 3.7e-16 87.8 72 59.7
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 3.7e-16 87.8 49 79.6
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 3.7e-16 87.8 72 61.1
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 3.7e-16 87.8 77 61.0
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 3.7e-16 87.8 72 62.5
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 4.8e-16 87.4 72 58.3
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 6.3e-16 87.0 72 59.7
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 6.3e-16 87.0 72 59.7
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 6.3e-16 87.0 73 57.5
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.3e-16 87.0 61 68.9
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 6.3e-16 87.0 72 61.1
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 8.2e-16 86.7 76 60.5
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.1e-15 86.3 49 77.6
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 1.1e-15 86.3 74 60.8
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 1.4e-15 85.9 73 60.3
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.4e-15 85.9 61 68.9
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 2.4e-15 85.1 73 60.3
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 4.1e-15 84.3 61 67.2
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 6.9e-15 83.6 60 66.7
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 6.9e-15 83.6 72 58.3
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 9.0e-15 83.2 62 66.1
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 9.0e-15 83.2 72 59.7
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.5e-14 82.4 70 55.7
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 2.0e-14 82.0 53 71.7
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 2.0e-14 82.0 72 55.6
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.6e-14 81.6 73 54.8
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.6e-14 81.6 73 54.8
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 7.7e-14 80.1 72 58.3
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.2e-13 78.6 73 53.4
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 2.2e-13 78.6 72 56.9
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 2.2e-13 78.6 70 55.7
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 2.9e-13 78.2 66 60.6
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 6.5e-13 77.0 70 55.7
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 4.2e-12 74.3 46 73.9
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 4.2e-12 74.3 72 51.4
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 1.2e-11 72.8 49 69.4
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 2.1e-11 72.0 69 58.0
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 4.6e-11 70.9 63 57.1
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 6.1e-11 70.5 40 70.0
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 7.9e-11 70.1 68 52.9
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 1.4e-10 69.3 49 65.3
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 2.3e-10 68.6 63 54.0
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 1.4e-07 59.3 44 59.1
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 6.9e-07 57.0 56 48.2
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 9.1e-07 56.6 48 60.4
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 9.1e-07 56.6 48 60.4
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 1.5e-06 55.8 48 60.4
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 1.5e-06 55.8 47 63.8
Dinv37295 Davidia involucrata HOM05D009309 ORTHO05D011491 2.6e-06 55.1 58 48.3
Rhsim05G0179800 Rhododendron simsii HOM05D009309 ORTHO05D011491 2.6e-06 55.1 53 45.3
MD12G1117300 Malus domestica HOM05D009309 ORTHO05D011491 4.5e-06 54.3 48 52.1
Migut.J00541 Erythranthe guttata HOM05D009309 ORTHO05D011491 5.9e-06 53.9 59 50.8
MBI10_g22826_MAGBIO Magnolia biondii HOM05D009309 ORTHO05D011491 5.9e-06 53.9 47 55.3
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 5.9e-06 53.9 63 50.8
Potri.006G127000 Populus trichocarpa HOM05D009309 ORTHO05D011491 5.9e-06 53.9 47 53.2
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 7.7e-06 53.5 49 49.0


User provided reference genes

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