Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37742 Nelumbo nucifera HOM05D001151 ORTHO05D006836 8.5e-67 256.9 134 100.0
Ciclev10016765m.g Citrus clementina HOM05D001151 ORTHO05D006836 1.9e-29 132.9 121 62.0
vmacro10996 Vaccinium macrocarpon HOM05D001151 ORTHO05D006836 1.2e-28 130.2 117 63.2
CSS0028548 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D006836 3.5e-28 128.6 97 70.1
TAR627G1052 Trochodendron aralioides HOM05D001151 ORTHO05D006836 1.0e-27 127.1 121 59.5
Aqoxy4G00085 Aquilegia oxysepala HOM05D001151 ORTHO05D006836 1.7e-27 126.3 118 59.3
TWI38G0934 Tripterygium wilfordii HOM05D001151 ORTHO05D006836 1.7e-27 126.3 117 58.1
Potri.001G442300 Populus trichocarpa HOM05D001151 ORTHO05D006836 3.0e-27 125.6 121 57.9
Sabra16G0298900 Salix brachista HOM05D001151 ORTHO05D006836 3.0e-27 125.6 121 57.9
Sabra16G0300800 Salix brachista HOM05D001151 ORTHO05D006836 3.0e-27 125.6 121 57.9
Manes.03G069600 Manihot esculenta HOM05D001151 ORTHO05D006836 3.9e-27 125.2 117 59.8
Cpa.g.sc832.1 Carica papaya HOM05D001151 ORTHO05D006836 1.5e-26 123.2 113 60.2
TWI63G0399 Tripterygium wilfordii HOM05D001151 ORTHO05D006836 1.9e-26 122.9 122 58.2
Cc09_g07160 Coffea canephora HOM05D001151 ORTHO05D006836 3.3e-26 122.1 105 62.9
Rhsim02G0167800 Rhododendron simsii HOM05D001151 ORTHO05D006836 3.3e-26 122.1 124 58.1
Sabra11G0144800 Salix brachista HOM05D001151 ORTHO05D006836 4.3e-26 121.7 116 56.9
Eucgr.A00513 Eucalyptus grandis HOM05D001151 ORTHO05D006836 7.3e-26 120.9 122 57.4
Cfa000752 Carpinus fangiana HOM05D001151 ORTHO05D006836 9.5e-26 120.6 125 53.6
Potri.011G154900 Populus trichocarpa HOM05D001151 ORTHO05D006836 9.5e-26 120.6 121 54.5
Dinv11973 Davidia involucrata HOM05D001151 ORTHO05D006836 1.2e-25 120.2 124 55.6
Sopen02g018850 Solanum pennellii HOM05D001151 ORTHO05D006836 3.6e-25 118.6 101 63.4
Peaxi162Scf00670g00341 Petunia axillaris HOM05D001151 ORTHO05D006836 6.2e-25 117.9 126 55.6
Nitab4.5_0006863g0010 Nicotiana tabacum HOM05D001151 ORTHO05D006836 8.1e-25 117.5 125 54.4
Actinidia11300 Actinidia chinensis HOM05D001151 ORTHO05D006836 1.4e-24 116.7 103 64.1
Nitab4.5_0002719g0040 Nicotiana tabacum HOM05D001151 ORTHO05D006836 4.0e-24 115.2 107 59.8
PGR083G0430 Punica granatum HOM05D001151 ORTHO05D006836 4.0e-24 115.2 123 53.7
Solyc02g069730.3 Solanum lycopersicum HOM05D001151 ORTHO05D006836 4.0e-24 115.2 101 62.4
Lj4g0007248 Lotus japonicus HOM05D001151 ORTHO05D006836 5.2e-24 114.8 123 53.7
Phvul.009G218200 Phaseolus vulgaris HOM05D001151 ORTHO05D006836 5.2e-24 114.8 119 54.6
arahy.Tifrunner.gnm1.ann1.S6J9QN Arachis hypogaea HOM05D001151 ORTHO05D006836 6.8e-24 114.4 120 52.5
Oeu060327.1 Olea europaea HOM05D001151 ORTHO05D006836 6.8e-24 114.4 123 52.8
Prupe.4G101900 Prunus persica HOM05D001151 ORTHO05D006836 6.8e-24 114.4 117 53.8
Thecc.06G005200 Theobroma cacao HOM05D001151 ORTHO05D006836 6.8e-24 114.4 113 54.9
DCAR_007799 Daucus carota HOM05D001151 ORTHO05D006836 8.9e-24 114.0 125 52.8
Lj2A338T75 Lonicera japonica HOM05D001151 ORTHO05D006836 8.9e-24 114.0 104 58.7
PSO675G9129 Papaver somniferum HOM05D001151 ORTHO05D006836 8.9e-24 114.0 130 55.4
arahy.Tifrunner.gnm1.ann1.RH6BR7 Arachis hypogaea HOM05D001151 ORTHO05D006836 1.2e-23 113.6 120 51.7
CiPaw.09G149300 Carya illinoinensis HOM05D001151 ORTHO05D006836 1.2e-23 113.6 121 49.6
QL05p063075 Quercus lobata HOM05D001151 ORTHO05D006836 1.2e-23 113.6 110 57.3
PSO541G3810 Papaver somniferum HOM05D001151 ORTHO05D006836 2.0e-23 112.8 131 53.4
PSO541G5365 Papaver somniferum HOM05D001151 ORTHO05D006836 2.0e-23 112.8 131 53.4
PGSC0003DMG400021195 Solanum tuberosum HOM05D001151 ORTHO05D006836 2.0e-23 112.8 121 57.0
CANSAT35G0921 Cannabis sativa HOM05D001151 ORTHO05D006836 2.6e-23 112.5 120 52.5
RcHm_v2.0_Chr5g0018351 Rosa chinensis HOM05D001151 ORTHO05D006836 2.6e-23 112.5 121 55.4
Glyma.15G191800 Glycine max HOM05D001151 ORTHO05D006836 3.4e-23 112.1 124 52.4
GSVIVG01037957001 Vitis vinifera HOM05D001151 ORTHO05D006836 4.4e-23 111.7 96 61.5
SalBow8G0157 Salvia bowleyana HOM05D001151 ORTHO05D006836 7.5e-23 110.9 117 53.0
Oeu052707.1 Olea europaea HOM05D001151 ORTHO05D006836 1.3e-22 110.2 119 52.9
AT4G20390 Arabidopsis thaliana HOM05D001151 ORTHO05D006836 1.7e-22 109.8 100 61.0
TPR.G6272 Trifolium pratense HOM05D001151 ORTHO05D006836 1.7e-22 109.8 120 52.5
MSTRG.16311 Avicennia marina HOM05D001151 ORTHO05D006836 3.7e-22 108.6 121 56.2
A08p14840 Brassica napus HOM05D001151 ORTHO05D006836 3.7e-22 108.6 100 60.0
BraA08t33468Z Brassica rapa HOM05D001151 ORTHO05D006836 3.7e-22 108.6 100 60.0
SalBow8G1344 Salvia bowleyana HOM05D001151 ORTHO05D006836 3.7e-22 108.6 117 52.1
MD10G1241300 Malus domestica HOM05D001151 ORTHO05D006836 4.9e-22 108.2 118 53.4
Duzib235G0035 Durio zibethinus HOM05D001151 ORTHO05D006836 6.4e-22 107.8 120 50.0
Medtr0097s0070 Medicago truncatula HOM05D001151 ORTHO05D006836 8.3e-22 107.5 106 53.8
TPR.G28534 Trifolium pratense HOM05D001151 ORTHO05D006836 8.3e-22 107.5 119 52.1
VMungo1309G2278 Vigna mungo HOM05D001151 ORTHO05D006836 8.3e-22 107.5 124 51.6
BcaC01g00668 Brassica carinata HOM05D001151 ORTHO05D006836 1.1e-21 107.1 100 61.0
C03p82910 Brassica napus HOM05D001151 ORTHO05D006836 1.1e-21 107.1 100 61.0
BolC3t20574H Brassica oleracea HOM05D001151 ORTHO05D006836 1.1e-21 107.1 100 62.0
Ca_02383_v3 Cicer arietinum L. HOM05D001151 ORTHO05D006836 1.4e-21 106.7 101 56.4
Lj6g0010921 Lotus japonicus HOM05D001151 ORTHO05D006836 1.4e-21 106.7 123 50.4
AL7G33500 Arabidopsis lyrata HOM05D001151 ORTHO05D006836 1.9e-21 106.3 100 61.0
BcaB03g11671 Brassica carinata HOM05D001151 ORTHO05D006836 1.9e-21 106.3 100 58.0
Glyma.U031308 Glycine max HOM05D001151 ORTHO05D006836 1.9e-21 106.3 122 50.8
Thhalv10026298m.g Eutrema salsugineum HOM05D001151 ORTHO05D006836 2.4e-21 105.9 107 55.1
FvH4_3g11410 Fragaria vesca HOM05D001151 ORTHO05D006836 2.4e-21 105.9 121 52.1
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.4e-21 105.9 121 52.1
FAN25G0432 Fragaria x ananassa HOM05D001151 ORTHO05D006836 2.4e-21 105.9 121 52.1
Lalb_Chr08g0233151 Lupinus albus HOM05D001151 ORTHO05D006836 4.1e-21 105.1 121 49.6
VMungo0251G2869 Vigna mungo HOM05D001151 ORTHO05D006836 4.1e-21 105.1 123 48.8
CARHR227220 Cardamine hirsuta HOM05D001151 ORTHO05D006836 7.1e-21 104.4 100 60.0
Medtr8g089300 Medicago truncatula HOM05D001151 ORTHO05D006836 9.2e-21 104.0 122 51.6
BcaB07g30519 Brassica carinata HOM05D001151 ORTHO05D006836 1.2e-20 103.6 105 54.3
Gohir.A06G119400 Gossypium hirsutum HOM05D001151 ORTHO05D006836 1.6e-20 103.2 121 48.8
Sp7g18760 Schrenkiella parvula HOM05D001151 ORTHO05D006836 1.6e-20 103.2 100 57.0
Aa31LG6G2780 Aethionema arabicum HOM05D001151 ORTHO05D006836 2.1e-20 102.8 95 58.9
Psat7g060880 Pisum sativum HOM05D001151 ORTHO05D006836 2.1e-20 102.8 124 47.6
EL10Ac4g08227 Beta vulgaris HOM05D001151 ORTHO05D006836 2.7e-20 102.4 115 54.8
C02p45080 Brassica napus HOM05D001151 ORTHO05D006836 3.5e-20 102.1 104 53.8
BolC2t10546H Brassica oleracea HOM05D001151 ORTHO05D006836 3.5e-20 102.1 104 53.8
MELO3C021781.2 Cucumis melo HOM05D001151 ORTHO05D006836 3.5e-20 102.1 101 53.5
ECA248G2052 Erigeron canadensis HOM05D001151 ORTHO05D006836 3.5e-20 102.1 108 52.8
SpUn0524_0010 Schrenkiella parvula HOM05D001151 ORTHO05D006836 3.5e-20 102.1 104 52.9
Aa31LG9G8660 Aethionema arabicum HOM05D001151 ORTHO05D006836 4.6e-20 101.7 100 56.0
BcaC03g16673 Brassica carinata HOM05D001151 ORTHO05D006836 4.6e-20 101.7 104 53.8
Psat1g019520 Pisum sativum HOM05D001151 ORTHO05D006836 4.6e-20 101.7 101 54.5
Gorai.010G144000 Gossypium raimondii HOM05D001151 ORTHO05D006836 6.0e-20 101.3 121 47.9
AUR62030119 Chenopodium quinoa HOM05D001151 ORTHO05D006836 7.8e-20 100.9 116 52.6
AUR62030120 Chenopodium quinoa HOM05D001151 ORTHO05D006836 7.8e-20 100.9 116 52.6
A02p28460 Brassica napus HOM05D001151 ORTHO05D006836 1.0e-19 100.5 104 52.9
BraA02t07881Z Brassica rapa HOM05D001151 ORTHO05D006836 1.0e-19 100.5 104 52.9
COL.COLO4_26866 Corchorus olitorius HOM05D001151 ORTHO05D006836 1.0e-19 100.5 108 54.6
Thhalv10001033m.g Eutrema salsugineum HOM05D001151 ORTHO05D006836 1.0e-19 100.5 104 52.9
AL8G15270 Arabidopsis lyrata HOM05D001151 ORTHO05D006836 2.3e-19 99.4 104 51.9
AT5G44550 Arabidopsis thaliana HOM05D001151 ORTHO05D006836 3.0e-19 99.0 104 51.0
C07p27420 Brassica napus HOM05D001151 ORTHO05D006836 3.0e-19 99.0 100 56.0
CARHR178560 Cardamine hirsuta HOM05D001151 ORTHO05D006836 3.0e-19 99.0 104 51.0
Glyma.08G129300 Glycine max HOM05D001151 ORTHO05D006836 3.0e-19 99.0 122 48.4
Carub.0008s0395 Capsella rubella HOM05D001151 ORTHO05D006836 3.9e-19 98.6 104 52.9
HanXRQChr11g0342561 Helianthus annuus HOM05D001151 ORTHO05D006836 3.9e-19 98.6 106 52.8
BcaC06g34540 Brassica carinata HOM05D001151 ORTHO05D006836 5.1e-19 98.2 100 56.0
A06p47100 Brassica napus HOM05D001151 ORTHO05D006836 5.1e-19 98.2 100 56.0
BolC7t43272H Brassica oleracea HOM05D001151 ORTHO05D006836 5.1e-19 98.2 100 56.0
BraA06t27582Z Brassica rapa HOM05D001151 ORTHO05D006836 5.1e-19 98.2 100 56.0
MD05G1263600 Malus domestica HOM05D001151 ORTHO05D006836 8.6e-19 97.4 117 47.9
BcaC06g31607 Brassica carinata HOM05D001151 ORTHO05D006836 1.1e-18 97.1 100 54.0
Haze_05971 Corylus avellana HOM05D001151 ORTHO05D006836 2.5e-18 95.9 106 51.9
Carub.0007s2077 Capsella rubella HOM05D001151 ORTHO05D006836 3.3e-18 95.5 89 60.7
EL10Ac3g06737 Beta vulgaris HOM05D001151 ORTHO05D006836 7.3e-18 94.4 125 50.4
EL10Ac4g08352 Beta vulgaris HOM05D001151 ORTHO05D006836 7.3e-18 94.4 123 51.2
Hund21556 Selenicereus undatus HOM05D001151 ORTHO05D006836 7.3e-18 94.4 109 48.6
AUR62042518 Chenopodium quinoa HOM05D001151 ORTHO05D006836 1.6e-17 93.2 114 50.0
Lsat_1_v5_gn_1_111521 Lactuca sativa HOM05D001151 ORTHO05D006836 1.6e-17 93.2 104 51.0
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.1e-17 92.8 121 48.8
Migut.M01934 Erythranthe guttata HOM05D001151 ORTHO05D006836 3.6e-17 92.0 96 55.2
Sed0027287 Sechium edule HOM05D001151 ORTHO05D006836 8.1e-17 90.9 105 50.5
ClCG01G008950 Citrullus lanatus HOM05D001151 ORTHO05D006836 1.1e-16 90.5 100 48.0
HanXRQChr11g0342571 Helianthus annuus HOM05D001151 ORTHO05D006836 1.2e-15 87.0 118 43.2
Sc05g0002950 Simmondsia chinensis HOM05D001151 ORTHO05D006836 7.6e-15 84.3 105 48.6
MBI18_g28206_MAGBIO Magnolia biondii HOM05D001151 ORTHO05D006836 1.7e-14 83.2 77 59.7
Sc05g0003220 Simmondsia chinensis HOM05D001151 ORTHO05D006836 2.9e-14 82.4 103 48.5
arahy.Tifrunner.gnm1.ann1.1BVQ2L Arachis hypogaea HOM05D001151 ORTHO05D006836 3.7e-14 82.0 77 53.2
Glyma.09G083400 Glycine max HOM05D001151 ORTHO05D006836 2.4e-13 79.3 82 53.7
SGA_v2.0_scaffold223G42882 Striga asiatica HOM05D001151 ORTHO05D006836 7.1e-13 77.8 119 42.0
Hma1.2p1_1028F.1_g249560 Hydrangea macrophylla HOM05D001151 ORTHO05D006836 7.8e-12 74.3 64 65.6
Hma1.2p1_1485F.1_g286490 Hydrangea macrophylla HOM05D001151 ORTHO05D006836 7.8e-12 74.3 64 65.6
ATR1098G060 Amborella trichopoda HOM05D001151 ORTHO05D006836 3.1e-08 62.4 101 42.6
Os12g0610800 Oryza sativa ssp. japonica HOM05D001151 ORTHO05D006836 6.8e-08 61.2 69 52.2
Sc15g0003710 Simmondsia chinensis HOM05D001151 ORTHO05D001504 2.9e-06 55.8 130 35.4
TAR624G1116 Trochodendron aralioides HOM05D000748 ORTHO05D000394 8.4e-06 54.3 76 50.0


User provided reference genes

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