Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 0.0e+00 1359.4 662 100.0
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 0.0e+00 1084.3 679 77.9
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 4.5e-294 1014.2 665 73.8
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 8.5e-293 1010.0 687 73.5
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 1.9e-292 1008.8 665 75.2
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 1.9e-292 1008.8 666 74.2
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 4.2e-292 1007.7 660 75.0
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 4.2e-292 1007.7 537 85.7
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 1.6e-291 1005.7 710 70.8
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.4e-290 1002.7 552 85.0
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 1.5e-289 999.2 570 81.6
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 3.3e-289 998.0 639 75.4
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 9.7e-289 996.5 660 74.2
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 2.2e-288 995.3 585 79.1
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 6.3e-288 993.8 660 73.9
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 2.4e-287 991.9 702 71.2
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 3.1e-287 991.5 664 72.9
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 3.1e-287 991.5 574 80.1
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 6.9e-287 990.3 579 80.1
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 1.3e-285 986.1 551 82.2
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 8.5e-285 983.4 559 81.6
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 1.4e-284 982.6 548 83.2
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 3.2e-284 981.5 549 82.1
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 9.4e-284 979.9 551 82.9
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 2.7e-283 978.4 573 79.1
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 8.0e-283 976.9 540 83.5
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 8.8e-282 973.4 559 79.8
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 2.6e-281 971.8 558 80.3
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 5.7e-281 970.7 550 82.0
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 9.7e-281 969.9 558 80.5
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.7e-280 969.1 550 80.0
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 6.3e-280 967.2 646 73.4
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 1.4e-279 966.1 594 77.9
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 7.0e-279 963.8 579 77.9
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 2.6e-278 961.8 551 80.6
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 7.7e-278 960.3 537 82.7
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 7.7e-278 960.3 561 78.1
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 1.7e-277 959.1 546 79.9
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 3.8e-277 958.0 639 71.5
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 6.5e-277 957.2 549 79.8
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 6.5e-277 957.2 644 72.2
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 1.9e-276 955.7 581 77.6
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.9e-276 955.7 537 80.8
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 3.2e-276 954.9 732 66.8
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 4.2e-276 954.5 537 81.4
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 5.5e-276 954.1 554 79.8
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 7.2e-276 953.7 637 72.2
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 1.2e-275 953.0 548 80.1
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 1.6e-275 952.6 553 78.5
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 2.1e-275 952.2 554 79.6
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 3.6e-275 951.4 643 72.3
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 6.1e-275 950.7 555 78.9
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 6.1e-275 950.7 555 78.9
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 6.1e-275 950.7 549 80.3
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 1.4e-274 949.5 652 71.6
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 1.4e-274 949.5 631 72.3
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.8e-274 949.1 556 78.4
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 5.2e-274 947.6 552 78.6
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 1.2e-273 946.4 565 77.3
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 4.4e-273 944.5 549 78.9
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 9.7e-273 943.3 547 78.8
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 1.3e-272 943.0 555 78.0
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 4.8e-272 941.0 565 76.1
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 4.8e-272 941.0 701 68.6
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 6.3e-272 940.6 548 80.5
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.1e-271 939.9 550 80.2
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 2.4e-271 938.7 550 80.0
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 6.5e-269 930.6 549 80.3
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 1.1e-268 929.9 666 70.7
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 6.1e-267 924.1 599 72.5
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 2.4e-263 912.1 520 81.0
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 6.5e-261 904.0 604 71.2
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 1.2e-259 899.8 552 77.2
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 3.0e-258 895.2 514 79.4
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 2.0e-257 892.5 895 54.7
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 4.1e-255 884.8 556 74.6
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 5.4e-255 884.4 499 81.6
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 9.2e-255 883.6 600 73.0
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 1.0e-253 880.2 836 56.8
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 1.9e-252 875.9 551 74.6
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 1.9e-247 859.4 468 84.2
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 4.1e-247 858.2 467 83.7
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 2.0e-246 855.9 644 63.8
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 1.1e-244 850.1 540 71.5
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 1.5e-241 839.7 656 65.4
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 2.4e-239 832.4 635 65.7
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 6.2e-235 817.8 562 69.4
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 2.5e-228 795.8 432 83.8
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 3.0e-221 772.3 502 71.5
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 3.0e-197 692.6 449 73.5
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 1.4e-191 673.7 550 58.0
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 5.3e-186 655.2 462 65.6
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 1.6e-182 643.7 369 79.1
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 6.5e-176 621.7 441 66.2
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 1.3e-171 607.4 586 53.4
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 2.8e-163 579.7 559 50.1
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 8.2e-163 578.2 539 53.8
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 3.2e-159 566.2 350 75.7
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 4.4e-156 555.8 561 48.1
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 3.8e-144 516.2 432 63.9
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 3.6e-126 456.4 452 54.4
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 9.5e-119 431.8 276 72.8
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 3.8e-99 366.7 201 80.6
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 3.5e-97 360.1 202 78.7
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 1.2e-84 318.5 194 78.4
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.6e-84 317.4 180 83.9
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 8.7e-80 302.4 172 79.1
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 5.8e-76 289.7 174 76.4
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 5.8e-76 289.7 170 78.8
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 7.2e-58 229.6 150 70.7
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.5e-52 211.8 119 83.2
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 3.8e-51 207.2 116 80.2
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.0e-48 197.6 106 87.7
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.2e-36 159.1 127 64.6
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 6.5e-35 153.3 127 62.2
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 6.1e-33 146.7 82 78.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 8.8e-32 142.9 80 82.5
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.9e-27 127.9 93 67.7
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.6e-27 126.3 112 58.9
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.6e-27 126.3 112 58.9
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.9e-19 100.9 78 69.2
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 3.4e-15 87.8 57 75.4
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.4e-13 80.5 59 69.5
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 2.0e-12 78.6 51 66.7
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.9e-10 72.0 41 82.9
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.6e-09 68.9 40 80.0
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.6e-09 68.9 40 80.0
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.1e-09 68.6 34 88.2
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 1.1e-08 66.2 42 69.0
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 2.3e-08 65.1 105 41.9


User provided reference genes

Program Settings