Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.4e-31 139.0 75 100.0
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.0e-28 128.6 75 92.0
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.2e-24 115.2 75 80.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 2.9e-24 114.8 75 80.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.9e-24 114.8 75 80.0
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.8e-24 114.4 75 77.3
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 3.8e-24 114.4 72 80.6
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 5.0e-24 114.0 70 80.0
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 5.0e-24 114.0 75 78.7
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 6.5e-24 113.6 75 78.7
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 6.5e-24 113.6 75 76.0
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.5e-24 113.2 75 76.0
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.5e-24 113.2 75 76.0
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 8.5e-24 113.2 75 78.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 8.5e-24 113.2 75 81.3
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-23 112.8 75 76.0
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.1e-23 112.8 72 79.2
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.1e-23 112.8 71 80.3
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.1e-23 112.8 72 79.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.4e-23 112.5 75 77.3
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.9e-23 112.1 74 78.4
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.9e-23 112.1 75 78.7
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.9e-23 112.1 75 78.7
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 4.2e-23 110.9 72 77.8
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 5.5e-23 110.5 74 74.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 7.2e-23 110.2 72 79.2
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 7.2e-23 110.2 72 79.2
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 7.2e-23 110.2 75 74.7
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 9.4e-23 109.8 74 74.3
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.2e-22 109.4 70 78.6
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.6e-22 109.0 71 76.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.6e-22 109.0 75 78.7
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.6e-22 109.0 75 74.7
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-22 109.0 75 74.7
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.6e-22 109.0 70 78.6
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.6e-22 109.0 75 73.3
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 2.1e-22 108.6 71 77.5
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.1e-22 108.6 75 74.7
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 3.6e-22 107.8 75 72.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 3.6e-22 107.8 71 77.5
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 3.6e-22 107.8 73 74.0
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.7e-22 107.5 71 74.6
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.7e-22 107.5 70 77.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.7e-22 107.5 72 76.4
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 4.7e-22 107.5 72 76.4
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 4.7e-22 107.5 75 74.7
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 6.1e-22 107.1 72 75.0
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 6.1e-22 107.1 72 77.8
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 6.1e-22 107.1 71 77.5
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 6.1e-22 107.1 72 75.0
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 8.0e-22 106.7 72 77.8
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.0e-21 106.3 71 74.6
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-21 106.3 72 75.0
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.0e-21 106.3 71 76.1
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.8e-21 105.5 71 76.1
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.8e-21 105.5 71 76.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.8e-21 105.5 72 77.8
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.8e-21 105.5 71 77.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.3e-21 105.1 73 72.6
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.3e-21 105.1 72 75.0
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.3e-21 105.1 70 75.7
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.3e-21 105.1 72 77.8
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.0e-21 104.8 71 76.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.0e-21 104.8 70 75.7
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.0e-21 104.8 70 75.7
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.9e-21 104.4 73 71.2
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.9e-21 104.4 71 74.6
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 5.2e-21 104.0 73 72.6
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.2e-21 104.0 72 75.0
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 5.2e-21 104.0 72 73.6
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 6.7e-21 103.6 70 75.7
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 6.7e-21 103.6 75 70.7
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.1e-20 102.8 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.5e-20 102.4 74 68.9
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-20 102.4 72 75.0
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-20 102.4 72 75.0
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 2.0e-20 102.1 70 72.9
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.6e-20 101.7 70 71.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.6e-20 101.7 70 71.4
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 4.4e-20 100.9 74 67.6
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 4.4e-20 100.9 70 72.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.4e-20 100.9 70 72.9
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 4.4e-20 100.9 70 71.4
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 5.7e-20 100.5 70 70.0
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 5.7e-20 100.5 70 70.0
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 5.7e-20 100.5 72 70.8
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 5.7e-20 100.5 72 70.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.7e-20 100.5 70 74.3
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 5.7e-20 100.5 72 73.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 7.4e-20 100.1 70 71.4
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 7.4e-20 100.1 72 70.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 7.4e-20 100.1 70 71.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 9.7e-20 99.8 70 71.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 9.7e-20 99.8 70 70.0
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 9.7e-20 99.8 70 71.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 9.7e-20 99.8 70 71.4
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 9.7e-20 99.8 73 71.2
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.3e-19 99.4 70 70.0
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.7e-19 99.0 70 71.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.7e-19 99.0 71 73.2
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.8e-19 98.2 70 71.4
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.8e-19 98.2 70 68.6
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.7e-19 97.8 70 70.0
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 3.7e-19 97.8 70 68.6
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 3.7e-19 97.8 70 68.6
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 3.7e-19 97.8 66 77.3
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 6.3e-19 97.1 74 67.6
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.2e-19 96.7 72 70.8
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.1e-18 96.3 74 66.2
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-18 96.3 74 66.2
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.4e-18 95.9 70 70.0
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.4e-18 95.9 70 68.6
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.8e-18 95.5 74 66.2
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.1e-18 94.7 72 69.4
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 3.1e-18 94.7 73 68.5
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.1e-18 94.4 73 68.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.0e-18 93.6 71 70.4
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 7.0e-18 93.6 71 66.2
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 9.1e-18 93.2 73 67.1
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-17 92.8 68 75.0
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.0e-16 89.7 60 73.3
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.7e-16 89.0 75 61.3
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.7e-16 89.0 54 81.5
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.7e-16 89.0 70 68.6
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.2e-16 88.6 73 65.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.8e-16 87.8 53 83.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.8e-16 87.8 53 83.0
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.8e-16 87.8 67 71.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 5.0e-16 87.4 62 69.4
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.9e-15 85.5 71 63.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.5e-15 85.1 68 67.6
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.5e-15 85.1 68 64.7
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.5e-15 84.0 70 61.4
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 5.5e-15 84.0 70 60.0
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.1e-14 82.0 70 60.0
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 3.6e-14 81.3 75 60.0
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.0e-13 79.7 47 80.9
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-13 79.3 55 72.7
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.4e-13 79.3 74 58.1
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.8e-13 77.0 55 72.7
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-12 75.5 66 54.5
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 2.0e-12 75.5 46 84.8
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 9.7e-12 73.2 64 64.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 8.3e-11 70.1 54 64.8
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.1e-10 67.8 68 52.9
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 3.2e-07 58.2 62 50.0


User provided reference genes

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