Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37410 Nelumbo nucifera HOM05D001047 ORTHO05D000768 1.4e-83 313.2 188 100.0
Lj4A916T17 Lonicera japonica HOM05D001047 ORTHO05D000768 1.8e-14 83.6 222 30.2
TAR691G0001 Trochodendron aralioides HOM05D001047 ORTHO05D000768 7.6e-13 78.2 62 61.3
MBI13_g00692_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 2.9e-12 76.3 62 62.9
Nn8g38582 Nelumbo nucifera HOM05D001047 ORTHO05D000768 8.4e-12 74.7 62 61.3
Dinv25535 Davidia involucrata HOM05D001047 ORTHO05D000768 3.2e-11 72.8 62 54.8
TAR468G0005 Trochodendron aralioides HOM05D001047 ORTHO05D000768 5.4e-11 72.0 59 59.3
TAR624G0161 Trochodendron aralioides HOM05D001047 ORTHO05D000768 9.3e-11 71.2 61 59.0
Aqoxy7G01011 Aquilegia oxysepala HOM05D001047 ORTHO05D000768 1.6e-10 70.5 245 26.5
vmacro06350 Vaccinium macrocarpon HOM05D001047 ORTHO05D000768 1.6e-10 70.5 62 51.6
DCAR_011935 Daucus carota HOM05D001047 ORTHO05D000768 2.7e-10 69.7 218 28.9
Glyma.17G047700 Glycine max HOM05D001047 ORTHO05D000768 3.5e-10 69.3 258 26.7
Glyma.13G112000 Glycine max HOM05D001047 ORTHO05D000768 4.6e-10 68.9 131 35.1
Actinidia30242 Actinidia chinensis HOM05D001047 ORTHO05D000768 6.0e-10 68.6 61 49.2
DCAR_028473 Daucus carota HOM05D001047 ORTHO05D000768 6.0e-10 68.6 231 27.3
Cpa.g.sc1667.1 Carica papaya HOM05D001047 ORTHO05D000768 1.0e-09 67.8 77 49.4
Dinv42416 Davidia involucrata HOM05D001047 ORTHO05D000768 1.8e-09 67.0 61 50.8
Cfa002963 Carpinus fangiana HOM05D001047 ORTHO05D000768 2.3e-09 66.6 75 50.7
Manes.03G042500 Manihot esculenta HOM05D001047 ORTHO05D000768 3.0e-09 66.2 80 48.8
Rhsim05G0004700 Rhododendron simsii HOM05D001047 ORTHO05D000768 3.0e-09 66.2 55 56.4
MBI19_g05284_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 5.1e-09 65.5 80 47.5
QL11p001290 Quercus lobata HOM05D001047 ORTHO05D000768 5.1e-09 65.5 75 52.0
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 6.7e-09 65.1 215 25.6
Peaxi162Scf00533g00059 Petunia axillaris HOM05D001047 ORTHO05D000768 6.7e-09 65.1 227 26.4
Rhsim03G0226700 Rhododendron simsii HOM05D001047 ORTHO05D000768 1.1e-08 64.3 62 51.6
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 1.9e-08 63.5 75 49.3
Eucgr.C00785 Eucalyptus grandis HOM05D001047 ORTHO05D000768 2.5e-08 63.2 75 46.7
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 2.5e-08 63.2 75 49.3
Duzib168G2328 Durio zibethinus HOM05D001047 ORTHO05D000768 3.3e-08 62.8 60 51.7
Lsat_1_v5_gn_8_85820 Lactuca sativa HOM05D001047 ORTHO05D000768 3.3e-08 62.8 222 26.1
Manes.11G016700 Manihot esculenta HOM05D001047 ORTHO05D000768 3.3e-08 62.8 42 66.7
Oeu000285.1 Olea europaea HOM05D001047 ORTHO05D000768 3.3e-08 62.8 61 47.5
Lsat_1_v5_gn_5_139561 Lactuca sativa HOM05D001047 ORTHO05D000768 5.6e-08 62.0 241 25.7
Lj7A689T75 Lonicera japonica HOM05D001047 ORTHO05D000768 5.6e-08 62.0 54 53.7
Nitab4.5_0000343g0360 Nicotiana tabacum HOM05D001047 ORTHO05D000768 5.6e-08 62.0 182 30.2
arahy.Tifrunner.gnm1.ann1.0AWF5M Arachis hypogaea HOM05D001047 ORTHO05D000768 7.4e-08 61.6 77 45.5
arahy.Tifrunner.gnm1.ann1.W1F2QM Arachis hypogaea HOM05D001047 ORTHO05D000768 7.4e-08 61.6 77 45.5
Prupe.7G194800 Prunus persica HOM05D001047 ORTHO05D000768 7.4e-08 61.6 75 45.3
Zm00001eb314010 Zea mays HOM05D001047 ORTHO05D000768 9.6e-08 61.2 81 45.7
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 1.3e-07 60.8 47 63.8
Lalb_Chr08g0232721 Lupinus albus HOM05D001047 ORTHO05D000768 1.3e-07 60.8 79 45.6
Oeu007421.1 Olea europaea HOM05D001047 ORTHO05D000768 1.3e-07 60.8 59 47.5
CAN.G1168.1 Capsicum annuum HOM05D001047 ORTHO05D000768 1.6e-07 60.5 75 46.7
Glyma.15G179600 Glycine max HOM05D001047 ORTHO05D000768 1.6e-07 60.5 47 63.8
Actinidia29942 Actinidia chinensis HOM05D001047 ORTHO05D000768 2.1e-07 60.1 70 40.0
Ciclev10008653m.g Citrus clementina HOM05D001047 ORTHO05D000768 2.1e-07 60.1 46 65.2
Lj6g0004228 Lotus japonicus HOM05D001047 ORTHO05D000768 2.1e-07 60.1 75 45.3
THA.LOC104806552 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 2.1e-07 60.1 36 77.8
Haze_16063 Corylus avellana HOM05D001047 ORTHO05D000768 2.8e-07 59.7 77 48.1
HanXRQChr04g0125901 Helianthus annuus HOM05D001047 ORTHO05D000768 2.8e-07 59.7 209 25.8
Lj4g0027094 Lotus japonicus HOM05D001047 ORTHO05D000768 2.8e-07 59.7 74 45.9
Lalb_Chr07g0181301 Lupinus albus HOM05D001047 ORTHO05D000768 2.8e-07 59.7 75 45.3
MD15G1220400 Malus domestica HOM05D001047 ORTHO05D000768 2.8e-07 59.7 76 39.5
VMungo1215G0026 Vigna mungo HOM05D001047 ORTHO05D000768 2.8e-07 59.7 50 54.0
Cfa003512 Carpinus fangiana HOM05D001047 ORTHO05D000768 3.7e-07 59.3 46 63.0
Lalb_Chr23g0276321 Lupinus albus HOM05D001047 ORTHO05D000768 3.7e-07 59.3 58 44.8
PSO386G0225 Papaver somniferum HOM05D001047 ORTHO05D000768 3.7e-07 59.3 81 45.7
PSO724G1100 Papaver somniferum HOM05D001047 ORTHO05D000768 3.7e-07 59.3 81 46.9
SalBow6G5825 Salvia bowleyana HOM05D001047 ORTHO05D000768 3.7e-07 59.3 57 50.9
Thecc.09G073600 Theobroma cacao HOM05D001047 ORTHO05D000768 3.7e-07 59.3 75 48.0
CiPaw.03G203400 Carya illinoinensis HOM05D001047 ORTHO05D000768 4.8e-07 58.9 75 42.7
Phvul.009G225300 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 4.8e-07 58.9 55 52.7
vmacro17112 Vaccinium macrocarpon HOM05D001047 ORTHO05D000768 4.8e-07 58.9 55 52.7
Atru.chr7.1739 Acer truncatum HOM05D001047 ORTHO05D000768 6.2e-07 58.5 75 48.0
CiPaw.02G133900 Carya illinoinensis HOM05D001047 ORTHO05D000768 6.2e-07 58.5 44 63.6
Duzib150G0095 Durio zibethinus HOM05D001047 ORTHO05D000768 6.2e-07 58.5 86 43.0
Gohir.A06G078400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 6.2e-07 58.5 75 41.3
Gohir.D06G077500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 6.2e-07 58.5 75 45.3
Gorai.010G090600 Gossypium raimondii HOM05D001047 ORTHO05D000768 6.2e-07 58.5 75 45.3
QL05p003803 Quercus lobata HOM05D001047 ORTHO05D000768 6.2e-07 58.5 77 46.8
Duzib187G0215 Durio zibethinus HOM05D001047 ORTHO05D000768 8.1e-07 58.2 47 57.4
Migut.D00926 Erythranthe guttata HOM05D001047 ORTHO05D000768 8.1e-07 58.2 54 51.9
Lalb_Chr11g0074131 Lupinus albus HOM05D001047 ORTHO05D000768 8.1e-07 58.2 45 64.4
Medtr5g013530 Medicago truncatula HOM05D001047 ORTHO05D000768 8.1e-07 58.2 82 45.1
AL2G34840 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 1.1e-06 57.8 43 67.4
AT1G74950 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 1.1e-06 57.8 47 63.8
BcaB05g24879 Brassica carinata HOM05D001047 ORTHO05D000768 1.1e-06 57.8 45 64.4
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.1e-06 57.8 41 73.2
SalBow5G2121 Salvia bowleyana HOM05D001047 ORTHO05D000768 1.1e-06 57.8 171 28.1
VMungo1215G0723 Vigna mungo HOM05D001047 ORTHO05D000768 1.1e-06 57.8 75 45.3
CANSAT56G2651 Cannabis sativa HOM05D001047 ORTHO05D000768 1.4e-06 57.4 70 48.6
CiPaw.01G216300 Carya illinoinensis HOM05D001047 ORTHO05D000768 1.4e-06 57.4 43 60.5
CiPaw.04G141300 Carya illinoinensis HOM05D001047 ORTHO05D000768 1.4e-06 57.4 75 44.0
CDE05G0578 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 1.4e-06 57.4 60 45.0
Hma1.2p1_0090F.1_g046100 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 1.4e-06 57.4 187 26.7
Lalb_Chr12g0200271 Lupinus albus HOM05D001047 ORTHO05D000768 1.4e-06 57.4 71 46.5
MD02G1096100 Malus domestica HOM05D001047 ORTHO05D000768 1.4e-06 57.4 76 40.8
Manes.16G093500 Manihot esculenta HOM05D001047 ORTHO05D000768 1.4e-06 57.4 79 48.1
SGA_v2.0_scaffold71G23887 Striga asiatica HOM05D001047 ORTHO05D000768 1.4e-06 57.4 51 54.9
arahy.Tifrunner.gnm1.ann1.I4L3EJ Arachis hypogaea HOM05D001047 ORTHO05D000768 1.8e-06 57.0 57 50.9
arahy.Tifrunner.gnm1.ann1.NLIW19 Arachis hypogaea HOM05D001047 ORTHO05D000768 1.8e-06 57.0 57 50.9
BcaC08g46928 Brassica carinata HOM05D001047 ORTHO05D000768 1.8e-06 57.0 45 62.2
A07p40590 Brassica napus HOM05D001047 ORTHO05D000768 1.8e-06 57.0 45 62.2
C06p48960 Brassica napus HOM05D001047 ORTHO05D000768 1.8e-06 57.0 45 62.2
BolC6t39933H Brassica oleracea HOM05D001047 ORTHO05D000768 1.8e-06 57.0 45 62.2
Carub.0001s1880 Capsella rubella HOM05D001047 ORTHO05D000768 1.8e-06 57.0 75 44.0
CDE11G0879 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 1.8e-06 57.0 57 49.1
Lsat_1_v5_gn_5_137041 Lactuca sativa HOM05D001047 ORTHO05D000768 1.8e-06 57.0 64 46.9
Sed0011504 Sechium edule HOM05D001047 ORTHO05D000768 1.8e-06 57.0 117 35.0
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 1.8e-06 57.0 74 45.9
TPR.G40124 Trifolium pratense HOM05D001047 ORTHO05D000768 1.8e-06 57.0 34 73.5
BcaC07g41271 Brassica carinata HOM05D001047 ORTHO05D000768 2.4e-06 56.6 75 42.7
CARHR068270 Cardamine hirsuta HOM05D001047 ORTHO05D000768 2.4e-06 56.6 45 64.4
BcaC08g46961 Brassica carinata HOM05D001047 ORTHO05D000768 3.1e-06 56.2 43 65.1
BcaNung06476 Brassica carinata HOM05D001047 ORTHO05D000768 3.1e-06 56.2 43 65.1
BraA02t06999Z Brassica rapa HOM05D001047 ORTHO05D000768 3.1e-06 56.2 43 65.1
Ca_02220_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 3.1e-06 56.2 50 58.0
Hma1.2p1_0090F.1_g046090 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 3.1e-06 56.2 192 26.6
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 3.1e-06 56.2 76 43.4
Potri.006G139400 Populus trichocarpa HOM05D001047 ORTHO05D000768 3.1e-06 56.2 43 72.1
TWI32G0022 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 3.1e-06 56.2 51 51.0
GSVIVG01016721001 Vitis vinifera HOM05D001047 ORTHO05D000768 3.1e-06 56.2 64 50.0
AL1G31760 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 4.0e-06 55.8 43 65.1
EL10Ac8g19004 Beta vulgaris HOM05D001047 ORTHO05D000768 4.0e-06 55.8 116 33.6
BcaB03g12929 Brassica carinata HOM05D001047 ORTHO05D000768 4.0e-06 55.8 75 44.0
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 4.0e-06 55.8 41 70.7
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 4.0e-06 55.8 41 70.7
Lalb_Chr13g0299341 Lupinus albus HOM05D001047 ORTHO05D000768 4.0e-06 55.8 75 42.7
Medtr5g013515 Medicago truncatula HOM05D001047 ORTHO05D000768 4.0e-06 55.8 32 75.0
Medtr5g013520 Medicago truncatula HOM05D001047 ORTHO05D000768 4.0e-06 55.8 75 44.0
PGR142G0888 Punica granatum HOM05D001047 ORTHO05D000768 4.0e-06 55.8 75 45.3
Atru.chr7.1738 Acer truncatum HOM05D001047 ORTHO05D000768 5.3e-06 55.5 31 83.9
BcaC03g15534 Brassica carinata HOM05D001047 ORTHO05D000768 5.3e-06 55.5 45 62.2
C02p32160 Brassica napus HOM05D001047 ORTHO05D000768 5.3e-06 55.5 45 62.2
BolC2t09254H Brassica oleracea HOM05D001047 ORTHO05D000768 5.3e-06 55.5 45 62.2
CSS0031905 Camellia sinensis var. sinensis HOM05D001047 ORTHO05D000768 5.3e-06 55.5 75 44.0
Thhalv10008419m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 5.3e-06 55.5 75 42.7
HanXRQChr10g0311841 Helianthus annuus HOM05D001047 ORTHO05D000768 5.3e-06 55.5 52 55.8
Psat1g136080 Pisum sativum HOM05D001047 ORTHO05D000768 5.3e-06 55.5 52 57.7
VMungo1347G0001 Vigna mungo HOM05D001047 ORTHO05D000768 5.3e-06 55.5 45 60.0
GSVIVG01015042001 Vitis vinifera HOM05D001047 ORTHO05D000768 5.3e-06 55.5 75 44.0
Zm00001eb327450 Zea mays HOM05D001047 ORTHO05D000768 5.3e-06 55.5 76 43.4
Actinidia32203 Actinidia chinensis HOM05D001047 ORTHO05D000768 6.9e-06 55.1 45 60.0
Aa31LG4G5160 Aethionema arabicum HOM05D001047 ORTHO05D000768 6.9e-06 55.1 44 65.9
A02p19630 Brassica napus HOM05D001047 ORTHO05D000768 6.9e-06 55.1 43 62.8
A09p59480 Brassica napus HOM05D000130 ORTHO05D000768 6.9e-06 55.1 75 42.7
BraA09t41326Z Brassica rapa HOM05D000130 ORTHO05D000768 6.9e-06 55.1 75 42.7
CANSAT56G3467 Cannabis sativa HOM05D001047 ORTHO05D000768 6.9e-06 55.1 76 44.7
CANSAT56G4180 Cannabis sativa HOM05D001047 ORTHO05D000768 6.9e-06 55.1 76 44.7
Carub.0002s2174 Capsella rubella HOM05D001047 ORTHO05D000768 6.9e-06 55.1 43 65.1
Glyma.04G013800 Glycine max HOM05D001047 ORTHO05D000768 6.9e-06 55.1 32 75.0
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 6.9e-06 55.1 79 44.3
PSO104G0045 Papaver somniferum HOM05D001047 ORTHO05D000768 6.9e-06 55.1 73 50.7
PSO421G0328 Papaver somniferum HOM05D001047 ORTHO05D000768 6.9e-06 55.1 103 38.8
Phvul.003G129200 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 6.9e-06 55.1 55 45.5
PGR044G1306 Punica granatum HOM05D001047 ORTHO05D000768 6.9e-06 55.1 42 64.3
Zm00001eb414910 Zea mays HOM05D001047 ORTHO05D000768 6.9e-06 55.1 132 33.3
EL10Ac7g16441 Beta vulgaris HOM05D001047 ORTHO05D000768 9.0e-06 54.7 39 69.2
BcaC07g38985 Brassica carinata HOM05D000130 ORTHO05D000768 9.0e-06 54.7 43 62.8
A08p29960 Brassica napus HOM05D001047 ORTHO05D000768 9.0e-06 54.7 75 45.3
C08p42770 Brassica napus HOM05D000130 ORTHO05D000768 9.0e-06 54.7 75 41.3
BolC8t49545H Brassica oleracea HOM05D001047 ORTHO05D000768 9.0e-06 54.7 75 45.3
BolC8t51833H Brassica oleracea HOM05D000130 ORTHO05D000768 9.0e-06 54.7 75 41.3
BraA08t34931Z Brassica rapa HOM05D001047 ORTHO05D000768 9.0e-06 54.7 75 45.3
Hma1.2p1_0542F.1_g175000 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 9.0e-06 54.7 77 44.2
Manes.04G147900 Manihot esculenta HOM05D001047 ORTHO05D000768 9.0e-06 54.7 36 66.7
PSO724G0961 Papaver somniferum HOM05D001047 ORTHO05D000768 9.0e-06 54.7 83 41.0


User provided reference genes

Program Settings