Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37324 Nelumbo nucifera HOM05D002522 ORTHO05D002744 1.8e-87 325.9 162 100.0
TAR629G3238 Trochodendron aralioides HOM05D002522 ORTHO05D002744 6.5e-29 131.3 129 57.4
Nn1g01744 Nelumbo nucifera HOM05D002522 ORTHO05D002744 3.0e-26 122.5 99 66.7
Prupe.2G179500 Prunus persica HOM05D002522 ORTHO05D002744 4.7e-19 98.6 118 46.6
Hma1.2p1_0384F.1_g140730 Hydrangea macrophylla HOM05D002522 ORTHO05D002744 1.2e-17 94.0 125 42.4
MD01G1073100 Malus domestica HOM05D002522 ORTHO05D002744 4.4e-17 92.0 128 46.1
TWI59G0857 Tripterygium wilfordii HOM05D002522 ORTHO05D002744 2.2e-16 89.7 127 45.7
Nitab4.5_0009475g0020 Nicotiana tabacum HOM05D002522 ORTHO05D002744 2.8e-16 89.4 127 47.2
QL04p059084 Quercus lobata HOM05D002522 ORTHO05D002744 1.1e-15 87.4 121 47.1
Duzib133G1226 Durio zibethinus HOM05D002522 ORTHO05D002744 1.8e-15 86.7 122 45.9
GSVIVG01027017001 Vitis vinifera HOM05D002522 ORTHO05D002744 3.1e-15 85.9 118 50.0
CSS0042455 Camellia sinensis var. sinensis HOM05D002522 ORTHO05D002744 4.1e-15 85.5 130 48.5
Actinidia28483 Actinidia chinensis HOM05D002522 ORTHO05D002744 5.4e-15 85.1 127 47.2
Hund27236 Selenicereus undatus HOM05D002522 ORTHO05D002744 5.4e-15 85.1 122 42.6
Gohir.A08G032100 Gossypium hirsutum HOM05D002522 ORTHO05D002744 9.1e-15 84.3 151 40.4
Hma1.2p1_0783F.1_g217000 Hydrangea macrophylla HOM05D002522 ORTHO05D002744 1.2e-14 84.0 128 48.4
COL.COLO4_06366 Corchorus olitorius HOM05D002522 ORTHO05D002744 2.0e-14 83.2 130 43.1
Gohir.D08G043000 Gossypium hirsutum HOM05D002522 ORTHO05D002744 2.0e-14 83.2 160 40.6
Gorai.004G041600 Gossypium raimondii HOM05D002522 ORTHO05D002744 2.0e-14 83.2 160 40.6
Gohir.A08G033400 Gossypium hirsutum HOM05D002522 ORTHO05D002744 3.5e-14 82.4 131 44.3
CSS0021990 Camellia sinensis var. sinensis HOM05D002522 ORTHO05D002744 4.5e-14 82.0 124 46.8
CSS0020906 Camellia sinensis var. sinensis HOM05D002522 ORTHO05D002744 5.9e-14 81.6 124 46.8
CANSAT56G2736 Cannabis sativa HOM05D002522 ORTHO05D002744 1.0e-13 80.9 118 44.1
Cpa.g.sc184.15 Carica papaya HOM05D002522 ORTHO05D002744 1.0e-13 80.9 131 41.2
Atru.chr5.602 Acer truncatum HOM05D002522 ORTHO05D002744 1.3e-13 80.5 120 45.0
Thecc.01G350300 Theobroma cacao HOM05D002522 ORTHO05D002744 1.7e-13 80.1 132 43.2
TPR.G18162 Trifolium pratense HOM05D002522 ORTHO05D002744 2.9e-13 79.3 88 53.4
Gorai.004G042900 Gossypium raimondii HOM05D002522 ORTHO05D002744 5.0e-13 78.6 124 45.2
Gohir.D08G044100 Gossypium hirsutum HOM05D002522 ORTHO05D002744 6.5e-13 78.2 124 44.4
Sc23g0002460 Simmondsia chinensis HOM05D002522 ORTHO05D002744 6.5e-13 78.2 74 56.8
Glyma.07G062300 Glycine max HOM05D002522 ORTHO05D002744 8.5e-13 77.8 129 45.0
Potri.014G092200 Populus trichocarpa HOM05D002522 ORTHO05D002744 1.5e-12 77.0 95 49.5
Oeu023794.1 Olea europaea HOM05D002522 ORTHO05D002744 1.9e-12 76.6 138 41.3
Cc02_g38730 Coffea canephora HOM05D002522 ORTHO05D002744 2.5e-12 76.3 126 44.4
Glyma.16G030300 Glycine max HOM05D002522 ORTHO05D002744 3.2e-12 75.9 122 43.4
Nitab4.5_0000305g0350 Nicotiana tabacum HOM05D002522 ORTHO05D002744 4.2e-12 75.5 130 43.1
PGSC0003DMG400000075 Solanum tuberosum HOM05D002522 ORTHO05D002744 4.2e-12 75.5 133 38.3
Manes.01G251300 Manihot esculenta HOM05D002522 ORTHO05D002744 7.2e-12 74.7 75 54.7
Sabra14G0066800 Salix brachista HOM05D002522 ORTHO05D002744 9.5e-12 74.3 95 49.5
Ciclev10021974m.g Citrus clementina HOM05D002522 ORTHO05D002744 2.1e-11 73.2 105 46.7
FAN10G0527 Fragaria x ananassa HOM05D002522 ORTHO05D002744 2.1e-11 73.2 127 39.4
FAN10G4069 Fragaria x ananassa HOM05D002522 ORTHO05D002744 2.1e-11 73.2 127 39.4
Phvul.010G105700 Phaseolus vulgaris HOM05D002522 ORTHO05D002744 2.7e-11 72.8 111 43.2
FAN03G0161 Fragaria x ananassa HOM05D002522 ORTHO05D002744 4.7e-11 72.0 127 39.4
Lalb_Chr15g0076101 Lupinus albus HOM05D002522 ORTHO05D002744 4.7e-11 72.0 102 46.1
FAN06G2411 Fragaria x ananassa HOM05D002522 ORTHO05D002744 6.1e-11 71.6 132 37.9
PSO384G1843 Papaver somniferum HOM05D002522 ORTHO05D002744 6.1e-11 71.6 78 51.3
PGSC0003DMG400033873 Solanum tuberosum HOM05D002522 ORTHO05D002744 6.1e-11 71.6 118 41.5
arahy.Tifrunner.gnm1.ann1.9XT8EU Arachis hypogaea HOM05D002522 ORTHO05D002744 8.0e-11 71.2 96 49.0
Nitab4.5_0002926g0020 Nicotiana tabacum HOM05D002522 ORTHO05D002744 8.0e-11 71.2 126 39.7
Solyc05g050110.3 Solanum lycopersicum HOM05D002522 ORTHO05D002744 8.0e-11 71.2 118 41.5
Sopen05g028490 Solanum pennellii HOM05D002522 ORTHO05D002744 8.0e-11 71.2 118 41.5
arahy.Tifrunner.gnm1.ann1.PM7ZWD Arachis hypogaea HOM05D002522 ORTHO05D002744 1.0e-10 70.9 95 47.4
CiPaw.02G036900 Carya illinoinensis HOM05D002522 ORTHO05D002744 1.0e-10 70.9 122 41.0
Thhalv10001605m.g Eutrema salsugineum HOM05D002522 ORTHO05D002744 1.0e-10 70.9 118 37.3
Lsat_1_v5_gn_3_138521 Lactuca sativa HOM05D002522 ORTHO05D002744 1.0e-10 70.9 110 44.5
Sed0004294 Sechium edule HOM05D002522 ORTHO05D002744 1.0e-10 70.9 106 43.4
FvH4_7g15580 Fragaria vesca HOM05D002522 ORTHO05D002744 1.4e-10 70.5 119 39.5
FAN06G4053 Fragaria x ananassa HOM05D002522 ORTHO05D002744 1.4e-10 70.5 119 38.7
Duzib138G1781 Durio zibethinus HOM05D002522 ORTHO05D002744 2.3e-10 69.7 78 52.6
Hund16679 Selenicereus undatus HOM05D002522 ORTHO05D002744 2.3e-10 69.7 96 44.8
VMungo0331G0494 Vigna mungo HOM05D002522 ORTHO05D002744 2.3e-10 69.7 133 39.1
CDE10G1313 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 3.0e-10 69.3 124 41.1
RcHm_v2.0_Chr1g0358261 Rosa chinensis HOM05D002522 ORTHO05D002744 3.0e-10 69.3 76 51.3
Solyc01g095270.3 Solanum lycopersicum HOM05D002522 ORTHO05D002744 3.0e-10 69.3 130 34.6
CAN.G78.140 Capsicum annuum HOM05D002522 ORTHO05D002744 6.8e-10 68.2 130 40.0
FAN01G2644 Fragaria x ananassa HOM05D002522 ORTHO05D002744 8.8e-10 67.8 119 37.8
Sopen01g039060 Solanum pennellii HOM05D002522 ORTHO05D002744 8.8e-10 67.8 127 39.4
Lalb_Chr04g0261811 Lupinus albus HOM05D002522 ORTHO05D002744 1.2e-09 67.4 91 47.3
Sp4g28260 Schrenkiella parvula HOM05D002522 ORTHO05D002744 1.2e-09 67.4 118 36.4
Lj3g0005347 Lotus japonicus HOM05D002522 ORTHO05D002744 2.0e-09 66.6 89 46.1
PSO135G0267 Papaver somniferum HOM05D002522 ORTHO05D002744 2.6e-09 66.2 59 57.6
Ca_03487_v3 Cicer arietinum L. HOM05D002522 ORTHO05D002744 7.5e-09 64.7 85 49.4
Lj9C594G20 Lonicera japonica HOM05D002522 ORTHO05D002744 7.5e-09 64.7 126 42.9
CDE10G1032 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 9.8e-09 64.3 127 35.4
THA.LOC104827610 Tarenaya hassleriana HOM05D002522 ORTHO05D002744 9.8e-09 64.3 61 57.4
arahy.Tifrunner.gnm1.ann1.D4XZDE Arachis hypogaea HOM05D002522 ORTHO05D002744 2.2e-08 63.2 41 75.6
Migut.B01812 Erythranthe guttata HOM05D002522 ORTHO05D002744 2.8e-08 62.8 126 40.5
Gohir.A11G219900 Gossypium hirsutum HOM05D002522 ORTHO05D002744 2.8e-08 62.8 75 54.7
Medtr8g028425 Medicago truncatula HOM05D002522 ORTHO05D002744 2.8e-08 62.8 87 46.0
Oeu054365.1 Olea europaea HOM05D002522 ORTHO05D002744 2.8e-08 62.8 49 67.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 4.9e-08 62.0 126 38.1
AL4G45480 Arabidopsis lyrata HOM05D002522 ORTHO05D002744 6.3e-08 61.6 118 33.1
Carub.0004s2890 Capsella rubella HOM05D002522 ORTHO05D002744 6.3e-08 61.6 118 34.7
BraA05t19154Z Brassica rapa HOM05D002522 ORTHO05D002744 8.3e-08 61.2 118 34.7
CARHR141490 Cardamine hirsuta HOM05D002522 ORTHO05D002744 8.3e-08 61.2 122 34.4
CDE04G1514 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 8.3e-08 61.2 127 34.6
Sc26g0000810 Simmondsia chinensis HOM05D002522 ORTHO05D002744 8.3e-08 61.2 49 67.3
arahy.Tifrunner.gnm1.ann1.R2D0FR Arachis hypogaea HOM05D002522 ORTHO05D002744 1.1e-07 60.8 41 73.2
Nitab4.5_0003779g0130 Nicotiana tabacum HOM05D002522 ORTHO05D002744 1.1e-07 60.8 51 58.8
THA.LOC104802051 Tarenaya hassleriana HOM05D002522 ORTHO05D002744 1.1e-07 60.8 129 38.8
A05p01590 Brassica napus HOM05D002522 ORTHO05D002744 3.1e-07 59.3 118 33.9
PGR042G3909 Punica granatum HOM05D002522 ORTHO05D002744 4.1e-07 58.9 130 35.4
SGA_v2.0_scaffold36G14409 Striga asiatica HOM05D002725 ORTHO05D003279 4.1e-07 58.9 118 39.0
Peaxi162Scf01254g00026 Petunia axillaris HOM05D002522 ORTHO05D002744 5.4e-07 58.5 128 39.1
BcaC01g05091 Brassica carinata HOM05D002522 ORTHO05D002744 7.0e-07 58.2 99 33.3
C03p30430 Brassica napus HOM05D002522 ORTHO05D002744 7.0e-07 58.2 99 33.3
BolC3t15391H Brassica oleracea HOM05D002522 ORTHO05D002744 7.0e-07 58.2 99 33.3
Aa31LG1G27600 Aethionema arabicum HOM05D002522 ORTHO05D002744 9.2e-07 57.8 119 35.3
DCAR_008643 Daucus carota HOM05D002522 ORTHO05D002744 9.2e-07 57.8 79 44.3
Peaxi162Scf00403g00833 Petunia axillaris HOM05D002522 ORTHO05D002744 9.2e-07 57.8 76 51.3
BcaC02g12507 Brassica carinata HOM05D002522 ORTHO05D002744 1.2e-06 57.4 86 40.7
C04p01810 Brassica napus HOM05D002522 ORTHO05D002744 1.2e-06 57.4 86 40.7
Psat4g157240 Pisum sativum HOM05D002522 ORTHO05D002744 1.6e-06 57.0 90 42.2
CAN.G602.8 Capsicum annuum HOM05D002522 ORTHO05D002744 2.7e-06 56.2 76 46.1
AUR62004424 Chenopodium quinoa HOM05D002522 ORTHO05D002744 2.7e-06 56.2 74 44.6
AUR62022630 Chenopodium quinoa HOM05D002522 ORTHO05D002744 2.7e-06 56.2 74 44.6
Phvul.006G108800 Phaseolus vulgaris HOM05D002522 ORTHO05D002744 2.7e-06 56.2 104 38.5
SGA_v2.0_scaffold4G02270 Striga asiatica HOM05D002522 ORTHO05D002744 4.5e-06 55.5 48 62.5
Eucgr.E00085 Eucalyptus grandis HOM05D002522 ORTHO05D002744 5.9e-06 55.1 115 34.8
HanXRQChr03g0093431 Helianthus annuus HOM05D002522 ORTHO05D002744 7.7e-06 54.7 55 58.2


User provided reference genes

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