Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 1.6e-155 552.7 278 100.0
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.6e-104 383.3 233 79.0
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.1e-104 382.9 233 78.5
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 3.6e-104 382.1 246 74.8
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.1e-103 380.6 240 76.2
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.4e-103 379.4 244 75.8
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.5e-102 376.7 244 72.5
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 3.4e-102 375.6 240 75.4
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 4.4e-102 375.2 240 76.7
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.3e-101 373.6 240 73.8
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.3e-101 373.6 243 74.5
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 8.4e-101 370.9 244 74.6
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 8.4e-101 370.9 244 72.1
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.9e-100 369.8 237 74.7
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 4.2e-100 368.6 244 72.5
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 5.4e-100 368.2 244 72.1
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 5.4e-100 368.2 240 75.0
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.6e-99 366.7 237 74.3
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 2.1e-99 366.3 244 73.4
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 4.6e-99 365.2 231 75.8
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 4.6e-99 365.2 244 72.5
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 6.0e-99 364.8 262 66.8
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 1.0e-98 364.0 242 72.3
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.0e-98 364.0 230 75.7
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.7e-98 363.2 262 66.4
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.7e-98 363.2 231 77.1
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 2.3e-98 362.8 244 71.7
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 2.3e-98 362.8 244 70.9
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 2.3e-98 362.8 237 74.7
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 3.0e-98 362.5 231 76.6
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 3.0e-98 362.5 225 76.4
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 3.9e-98 362.1 237 71.3
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 5.1e-98 361.7 225 76.9
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 5.1e-98 361.7 237 73.0
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 5.1e-98 361.7 244 71.7
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.1e-97 360.5 235 74.5
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 1.1e-97 360.5 225 76.0
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 2.5e-97 359.4 225 76.0
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 3.3e-97 359.0 244 70.5
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 3.3e-97 359.0 244 69.3
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 4.3e-97 358.6 239 72.4
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 4.3e-97 358.6 224 75.4
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 7.3e-97 357.8 244 70.5
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 7.3e-97 357.8 224 75.4
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.4e-95 353.6 244 73.0
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 4.0e-95 352.1 240 71.2
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 4.0e-95 352.1 224 75.4
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 6.9e-95 351.3 225 74.7
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.5e-94 350.1 244 70.9
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-94 350.1 240 70.4
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 3.4e-94 349.0 244 68.4
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 5.8e-94 348.2 222 75.7
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 9.9e-94 347.4 228 71.9
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.3e-93 347.1 245 66.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.3e-93 347.1 224 73.2
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 4.9e-93 345.1 222 73.0
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 6.4e-93 344.7 224 72.3
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 6.4e-93 344.7 240 69.6
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.4e-92 343.6 245 66.5
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.9e-92 343.2 235 70.2
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.9e-92 343.2 235 70.2
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 4.2e-92 342.0 222 71.6
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 7.1e-92 341.3 224 73.2
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.2e-91 340.5 224 72.8
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.2e-91 340.5 224 72.8
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 1.2e-91 340.5 224 72.8
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 1.2e-91 340.5 224 72.8
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.2e-91 340.5 224 72.8
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.5e-91 339.0 223 72.6
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.0e-90 337.4 222 73.4
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 1.8e-90 336.7 237 68.4
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 2.3e-90 336.3 233 69.5
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.0e-90 335.9 223 70.9
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 3.9e-90 335.5 245 66.1
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.1e-89 334.0 226 71.2
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.1e-89 334.0 234 68.8
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.1e-89 334.0 225 67.6
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 4.3e-89 332.0 223 72.2
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.6e-88 330.1 276 61.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 2.4e-87 326.2 224 71.4
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 3.1e-87 325.9 234 66.2
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 3.4e-86 322.4 230 66.5
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 7.6e-86 321.2 252 62.7
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 3.8e-85 318.9 224 67.4
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 8.4e-85 317.8 228 67.5
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.9e-84 316.6 242 64.9
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 7.1e-84 314.7 227 67.0
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 3.5e-83 312.4 277 59.2
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 2.5e-81 306.2 209 69.9
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.4e-79 300.4 244 63.1
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 6.5e-77 291.6 224 64.3
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.9e-76 290.0 230 60.9
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 7.9e-75 284.6 197 69.5
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.9e-74 282.3 195 70.3
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 2.7e-67 259.6 190 67.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 6.1e-67 258.5 188 67.0
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.7e-64 250.4 233 53.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 2.8e-64 249.6 224 53.1
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.5e-62 243.8 151 77.5
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.4e-60 237.3 231 56.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 9.4e-60 234.6 231 54.5
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 9.7e-57 224.6 226 51.8
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.5e-54 217.2 158 65.8
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 1.3e-48 197.6 240 46.7
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 3.7e-48 196.1 237 47.7
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 3.7e-48 196.1 139 69.8
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.8e-47 193.7 262 40.5
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 5.0e-45 185.7 128 71.1
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.1e-44 184.5 199 51.8
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.0e-41 173.7 224 40.6
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.3e-40 171.0 209 48.8
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 7.0e-31 138.7 171 44.4
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 7.0e-31 138.7 271 33.9
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.5e-25 120.9 110 57.3
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.0e-25 120.6 80 73.8
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 6.6e-21 105.5 73 65.8
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 6.1e-19 99.0 64 70.3
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.9e-15 87.4 127 42.5
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 4.1e-15 86.3 64 64.1
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 3.3e-12 76.6 47 74.5
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 2.3e-10 70.5 50 70.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 1.2e-09 68.2 49 59.2
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 2.2e-08 63.9 39 74.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.9e-07 60.8 209 25.4


User provided reference genes

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