Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36908 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.8e-27 125.2 62 100.0
Nn3g21297 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.9e-21 105.1 60 85.0
Nn6g35128 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.4e-19 99.0 53 88.7
Nn4g26029 Nelumbo nucifera HOM05D000404 ORTHO05D005791 9.2e-16 86.3 62 72.6
Nn1g07627 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.2e-15 85.9 50 84.0
Gohir.D10G166400 Gossypium hirsutum HOM05D000404 ORTHO05D005791 6.2e-12 73.6 52 69.2
Gorai.011G185700 Gossypium raimondii HOM05D000404 ORTHO05D005791 6.2e-12 73.6 52 69.2
Ca_00575_v3 Cicer arietinum L. HOM05D000404 ORTHO05D005791 1.4e-11 72.4 50 72.0
DCAR_024613 Daucus carota HOM05D000404 ORTHO05D005791 1.8e-11 72.0 60 63.3
Dinv44427 Davidia involucrata HOM05D000404 ORTHO05D005791 1.8e-11 72.0 61 57.4
Gohir.A10G101605 Gossypium hirsutum HOM05D000404 ORTHO05D005791 3.1e-11 71.2 52 67.3
CANSAT78G2211 Cannabis sativa HOM05D000404 ORTHO05D005791 4.0e-11 70.9 49 69.4
Hma1.2p1_0823F.1_g224600 Hydrangea macrophylla HOM05D000404 ORTHO05D005791 4.0e-11 70.9 61 57.4
Solyc01g067660.3 Solanum lycopersicum HOM05D000404 ORTHO05D005791 5.2e-11 70.5 49 63.3
Cpa.g.sc16.112 Carica papaya HOM05D000404 ORTHO05D005791 6.8e-11 70.1 49 67.3
Cfa015495 Carpinus fangiana HOM05D000404 ORTHO05D005791 6.8e-11 70.1 54 63.0
Peaxi162Scf00386g00222 Petunia axillaris HOM05D000404 ORTHO05D005791 6.8e-11 70.1 49 67.3
CAN.G223.10 Capsicum annuum HOM05D000404 ORTHO05D005791 8.9e-11 69.7 51 62.7
Cfa015494 Carpinus fangiana HOM05D000404 ORTHO05D005791 1.5e-10 68.9 54 61.1
CiPaw.01G153400 Carya illinoinensis HOM05D000404 ORTHO05D005791 1.5e-10 68.9 49 67.3
Sopen01g029610 Solanum pennellii HOM05D000404 ORTHO05D005791 1.5e-10 68.9 48 64.6
TAR365G0265 Trochodendron aralioides HOM05D000404 ORTHO05D005791 1.5e-10 68.9 45 73.3
AUR62041243 Chenopodium quinoa HOM05D000404 ORTHO05D005791 2.0e-10 68.6 45 71.1
MD16G1175300 Malus domestica HOM05D000404 ORTHO05D005791 2.0e-10 68.6 51 64.7
Glyma.15G098100 Glycine max HOM05D000404 ORTHO05D005791 2.6e-10 68.2 50 68.0
Atru.chr4.2752 Acer truncatum HOM05D000404 ORTHO05D005791 3.4e-10 67.8 48 68.8
Haze_01059 Corylus avellana HOM05D000404 ORTHO05D005791 3.4e-10 67.8 49 65.3
PGSC0003DMG400010664 Solanum tuberosum HOM05D000404 ORTHO05D005791 3.4e-10 67.8 49 61.2
Dinv38327 Davidia involucrata HOM05D000404 ORTHO05D005791 4.4e-10 67.4 61 54.1
MD13G1174000 Malus domestica HOM05D000404 ORTHO05D005791 4.4e-10 67.4 49 65.3
Medtr2g020240 Medicago truncatula HOM05D000404 ORTHO05D005791 4.4e-10 67.4 50 68.0
PSO210G4605 Papaver somniferum HOM05D000404 ORTHO05D005791 4.4e-10 67.4 56 62.5
Aqoxy2G03092 Aquilegia oxysepala HOM05D000404 ORTHO05D005791 5.8e-10 67.0 46 71.7
Cc03_g02380 Coffea canephora HOM05D000404 ORTHO05D005791 5.8e-10 67.0 49 63.3
Phvul.006G161200 Phaseolus vulgaris HOM05D000404 ORTHO05D005791 5.8e-10 67.0 50 68.0
Prupe.1G142400 Prunus persica HOM05D000404 ORTHO05D005791 5.8e-10 67.0 48 66.7
PGR015G0006 Punica granatum HOM05D000404 ORTHO05D005791 5.8e-10 67.0 52 57.7
PGR104G0002 Punica granatum HOM05D000404 ORTHO05D005791 5.8e-10 67.0 52 57.7
Thecc.04G277400 Theobroma cacao HOM05D000404 ORTHO05D005791 5.8e-10 67.0 50 66.0
VMungo0540G0329 Vigna mungo HOM05D000404 ORTHO05D005791 5.8e-10 67.0 50 68.0
CSS0040095 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 7.5e-10 66.6 50 60.0
GSVIVG01017808001 Vitis vinifera HOM05D000404 ORTHO05D005791 7.5e-10 66.6 61 52.5
Actinidia00051 Actinidia chinensis HOM05D000404 ORTHO05D005791 9.8e-10 66.2 59 55.9
AUR62014139 Chenopodium quinoa HOM05D000404 ORTHO05D005791 9.8e-10 66.2 45 66.7
Duzib151G0511 Durio zibethinus HOM05D000404 ORTHO05D005791 9.8e-10 66.2 45 71.1
COL.COLO4_13931 Corchorus olitorius HOM05D000404 ORTHO05D005791 1.3e-09 65.9 45 68.9
Manes.03G191000 Manihot esculenta HOM05D000404 ORTHO05D005791 1.3e-09 65.9 50 64.0
Sabra08G0157500 Salix brachista HOM05D000404 ORTHO05D005791 1.3e-09 65.9 63 52.4
Sed0000536 Sechium edule HOM05D000404 ORTHO05D005791 1.3e-09 65.9 49 65.3
Ciclev10004689m.g Citrus clementina HOM05D000404 ORTHO05D005791 1.7e-09 65.5 45 66.7
MELO3C021362.2 Cucumis melo HOM05D000404 ORTHO05D005791 1.7e-09 65.5 53 60.4
CsaV3_6G005730 Cucumis sativus L. HOM05D000404 ORTHO05D005791 1.7e-09 65.5 53 60.4
vmacro22596 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 1.7e-09 65.5 45 68.9
arahy.Tifrunner.gnm1.ann1.68PBWJ Arachis hypogaea HOM05D000404 ORTHO05D005791 2.2e-09 65.1 48 66.7
CSS0006318 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 2.2e-09 65.1 50 60.0
Duzib052G0769 Durio zibethinus HOM05D000404 ORTHO05D005791 2.2e-09 65.1 45 68.9
Oeu007862.1 Olea europaea HOM05D000404 ORTHO05D005791 2.2e-09 65.1 45 66.7
Sc19g0004940 Simmondsia chinensis HOM05D000404 ORTHO05D005791 2.2e-09 65.1 49 61.2
Glyma.13G215000 Glycine max HOM05D000404 ORTHO05D005791 2.9e-09 64.7 50 66.0
Lalb_Chr18g0055731 Lupinus albus HOM05D000404 ORTHO05D005791 2.9e-09 64.7 49 65.3
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 3.7e-09 64.3 48 66.7
QL06p007345 Quercus lobata HOM05D000404 ORTHO05D005791 3.7e-09 64.3 49 61.2
Sc13g0003610 Simmondsia chinensis HOM05D000404 ORTHO05D005791 3.7e-09 64.3 45 62.2
AT5G18670 Arabidopsis thaliana HOM05D000404 ORTHO05D005791 4.9e-09 63.9 52 61.5
BraA10t44154Z Brassica rapa HOM05D000404 ORTHO05D005791 4.9e-09 63.9 49 61.2
FvH4_4g17180 Fragaria vesca HOM05D000404 ORTHO05D005791 4.9e-09 63.9 51 60.8
FAN12G2473 Fragaria x ananassa HOM05D000404 ORTHO05D005791 4.9e-09 63.9 51 60.8
FAN12G3224 Fragaria x ananassa HOM05D000404 ORTHO05D005791 4.9e-09 63.9 51 60.8
HanXRQChr03g0080071 Helianthus annuus HOM05D000404 ORTHO05D005791 4.9e-09 63.9 50 58.0
HanXRQChr03g0080101 Helianthus annuus HOM05D000404 ORTHO05D005791 4.9e-09 63.9 50 58.0
PSO170G0635 Papaver somniferum HOM05D000404 ORTHO05D005791 4.9e-09 63.9 56 60.7
Potri.008G204200 Populus trichocarpa HOM05D000404 ORTHO05D005791 4.9e-09 63.9 45 64.4
SalBow2G2518 Salvia bowleyana HOM05D000404 ORTHO05D005791 4.9e-09 63.9 45 64.4
Sp6g25670 Schrenkiella parvula HOM05D000404 ORTHO05D005791 4.9e-09 63.9 55 58.2
arahy.Tifrunner.gnm1.ann1.60DV95 Arachis hypogaea HOM05D000404 ORTHO05D005791 6.4e-09 63.5 46 69.6
arahy.Tifrunner.gnm1.ann1.I36EUT Arachis hypogaea HOM05D000404 ORTHO05D005791 6.4e-09 63.5 46 69.6
Carub.0006s1697 Capsella rubella HOM05D000404 ORTHO05D005791 6.4e-09 63.5 52 61.5
CARHR194330 Cardamine hirsuta HOM05D000404 ORTHO05D005791 6.4e-09 63.5 52 61.5
CDE11G0555 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 6.4e-09 63.5 58 62.1
EL10Ac3g06555 Beta vulgaris HOM05D000404 ORTHO05D005791 8.3e-09 63.2 48 60.4
A10p20890 Brassica napus HOM05D000404 ORTHO05D005791 8.3e-09 63.2 49 61.2
BraA03t10226Z Brassica rapa HOM05D000404 ORTHO05D005791 8.3e-09 63.2 52 55.8
Eucgr.H03767 Eucalyptus grandis HOM05D000404 ORTHO05D005791 8.3e-09 63.2 46 63.0
Hund24912 Selenicereus undatus HOM05D000404 ORTHO05D005791 8.3e-09 63.2 45 60.0
Hund24913 Selenicereus undatus HOM05D000404 ORTHO05D005791 8.3e-09 63.2 45 60.0
Aa31LG11G10950 Aethionema arabicum HOM05D000404 ORTHO05D005791 1.1e-08 62.8 52 59.6
ClCG06G005390 Citrullus lanatus HOM05D000404 ORTHO05D005791 1.1e-08 62.8 45 64.4
FAN17G2506 Fragaria x ananassa HOM05D000404 ORTHO05D005791 1.1e-08 62.8 51 60.8
FAN22G2151 Fragaria x ananassa HOM05D000404 ORTHO05D005791 1.1e-08 62.8 51 60.8
Rhsim02G0013700 Rhododendron simsii HOM05D000404 ORTHO05D005791 1.1e-08 62.8 45 62.2
SGA_v2.0_scaffold142G35699 Striga asiatica HOM05D000404 ORTHO05D005791 1.4e-08 62.4 45 62.2
TWI73G0089 Tripterygium wilfordii HOM05D000404 ORTHO05D005791 1.9e-08 62.0 45 64.4
AL6G29950 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 2.4e-08 61.6 49 59.2
A03p09020 Brassica napus HOM05D000404 ORTHO05D005791 2.4e-08 61.6 49 59.2
C09p57790 Brassica napus HOM05D000404 ORTHO05D005791 2.4e-08 61.6 49 59.2
BolC9t58648H Brassica oleracea HOM05D000404 ORTHO05D005791 2.4e-08 61.6 49 59.2
Lsat_1_v5_gn_5_50720 Lactuca sativa HOM05D000404 ORTHO05D005791 2.4e-08 61.6 49 59.2
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 3.2e-08 61.2 47 61.7
BcaC04g18656 Brassica carinata HOM05D000404 ORTHO05D005791 3.2e-08 61.2 49 57.1
Lj6A669G30 Lonicera japonica HOM05D000404 ORTHO05D005791 3.2e-08 61.2 49 59.2
SalBow5G1198 Salvia bowleyana HOM05D000404 ORTHO05D005791 3.2e-08 61.2 45 64.4
SalBow5G2195 Salvia bowleyana HOM05D000404 ORTHO05D005791 3.2e-08 61.2 45 64.4
TPR.G22897 Trifolium pratense HOM05D000404 ORTHO05D005791 3.2e-08 61.2 46 65.2
BcaB01g05257 Brassica carinata HOM05D000404 ORTHO05D005791 4.1e-08 60.8 45 62.2
C03p10500 Brassica napus HOM05D000404 ORTHO05D005791 4.1e-08 60.8 45 62.2
BolC3t13532H Brassica oleracea HOM05D000404 ORTHO05D005791 4.1e-08 60.8 45 62.2
Migut.G00212 Erythranthe guttata HOM05D000404 ORTHO05D005791 4.1e-08 60.8 45 60.0
Migut.O00834 Erythranthe guttata HOM05D000404 ORTHO05D005791 4.1e-08 60.8 45 60.0
LjContig00389g0014251 Lotus japonicus HOM05D000404 ORTHO05D005791 4.1e-08 60.8 46 65.2
RcHm_v2.0_Chr4g0420971 Rosa chinensis HOM05D000404 ORTHO05D005791 4.1e-08 60.8 51 58.8
CDE12G0716 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 5.4e-08 60.5 45 62.2
Thhalv10013215m.g Eutrema salsugineum HOM05D000404 ORTHO05D005791 5.4e-08 60.5 52 59.6
FAN07G0337 Fragaria x ananassa HOM05D000404 ORTHO05D005791 5.4e-08 60.5 51 58.8
THA.LOC104827120 Tarenaya hassleriana HOM05D000404 ORTHO05D005791 9.2e-08 59.7 49 57.1
unitig_748.g8576 Utricularia gibba HOM05D000404 ORTHO05D005791 9.2e-08 59.7 59 52.5
ATR0706G226 Amborella trichopoda HOM05D000404 ORTHO05D005791 1.2e-07 59.3 43 65.1
AL962U10020 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 1.2e-07 59.3 52 51.9
MSTRG.10053 Avicennia marina HOM05D000404 ORTHO05D005791 1.2e-07 59.3 59 52.5
Lalb_Chr20g0118131 Lupinus albus HOM05D000404 ORTHO05D005791 1.2e-07 59.3 50 64.0
ECA240G3803 Erigeron canadensis HOM05D000084 ORTHO05D000363 1.6e-07 58.9 49 57.1
CARHR080910 Cardamine hirsuta HOM05D000404 ORTHO05D005791 2.1e-07 58.5 41 68.3
Gohir.D02G052000 Gossypium hirsutum HOM05D000404 ORTHO05D005791 2.1e-07 58.5 49 65.3
Gorai.005G057300 Gossypium raimondii HOM05D000404 ORTHO05D005791 2.1e-07 58.5 49 65.3
Gohir.A02G046300 Gossypium hirsutum HOM05D000404 ORTHO05D005791 2.7e-07 58.2 49 65.3
unitig_32.g11750 Utricularia gibba HOM05D000404 ORTHO05D005791 2.7e-07 58.2 59 50.8
Lsat_1_v5_gn_5_50601 Lactuca sativa HOM05D000404 ORTHO05D005791 3.5e-07 57.8 49 55.1
MBI18_g29028_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 3.9e-06 54.3 61 47.5
Zm00001eb016920 Zea mays HOM05D000404 ORTHO05D005791 6.6e-06 53.5 59 45.8
MBI18_g42097_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 8.6e-06 53.1 61 49.2


User provided reference genes

Program Settings