Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36868 Nelumbo nucifera HOM05D000718 ORTHO05D003905 1.9e-65 252.3 124 100.0
Nn1g04431 Nelumbo nucifera HOM05D000718 ORTHO05D003905 1.7e-53 212.6 116 89.7
Nn8g41266 Nelumbo nucifera HOM05D000718 ORTHO05D003905 3.1e-39 165.2 116 76.7
Nn1g09180 Nelumbo nucifera HOM05D000718 ORTHO05D003905 3.6e-35 151.8 116 65.5
TAR624G0221 Trochodendron aralioides HOM05D000718 ORTHO05D003905 5.2e-26 121.3 117 56.4
MBI06_g08604_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D003905 7.0e-23 110.9 116 51.7
TAR627G0128 Trochodendron aralioides HOM05D000718 ORTHO05D003905 1.6e-22 109.8 117 49.6
CSS0001779 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D003905 7.7e-22 107.5 117 49.6
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 3.8e-21 105.1 117 48.7
Rhsim06G0207700 Rhododendron simsii HOM05D000718 ORTHO05D003905 1.1e-20 103.6 117 47.0
Lj1P830T16 Lonicera japonica HOM05D000718 ORTHO05D003905 4.2e-20 101.7 117 47.0
Actinidia35212 Actinidia chinensis HOM05D000718 ORTHO05D003905 7.2e-20 100.9 116 48.3
vmacro09493 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 7.2e-20 100.9 108 49.1
vmacro11936 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 7.2e-20 100.9 116 48.3
vmacro23383 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 7.2e-20 100.9 116 48.3
Dinv18363 Davidia involucrata HOM05D000718 ORTHO05D003905 9.4e-20 100.5 116 48.3
CSS0038708 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D003905 2.1e-19 99.4 117 46.2
GSVIVG01014200001 Vitis vinifera HOM05D000718 ORTHO05D002712 2.1e-19 99.4 118 45.8
Dinv14993 Davidia involucrata HOM05D000718 ORTHO05D003905 4.7e-19 98.2 116 44.8
vmacro14648 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 1.0e-18 97.1 117 45.3
Glyma.12G157500 Glycine max HOM05D000718 ORTHO05D003905 1.4e-18 96.7 117 46.2
QL04p083599 Quercus lobata HOM05D000718 ORTHO05D003905 1.4e-18 96.7 116 46.6
QL02p094738 Quercus lobata HOM05D000718 ORTHO05D003905 3.0e-18 95.5 116 46.6
MBI07_g35375_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D003905 4.0e-18 95.1 116 45.7
CiPaw.11G160500 Carya illinoinensis HOM05D000718 ORTHO05D003905 5.2e-18 94.7 116 44.0
QL02p094759 Quercus lobata HOM05D000718 ORTHO05D003905 5.2e-18 94.7 116 44.8
Rhsim04G0026200 Rhododendron simsii HOM05D000718 ORTHO05D003905 6.8e-18 94.4 110 49.1
Potri.011G109700 Populus trichocarpa HOM05D000718 ORTHO05D003905 8.8e-18 94.0 109 45.0
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 1.2e-17 93.6 116 44.0
MBI07_g09572_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D003905 1.5e-17 93.2 113 49.6
Cpa.g.c47142 Carica papaya HOM05D000718 ORTHO05D003905 2.0e-17 92.8 116 45.7
QL04p083602 Quercus lobata HOM05D000718 ORTHO05D003905 2.0e-17 92.8 115 46.1
ATR0602G054 Amborella trichopoda HOM05D000718 ORTHO05D003905 3.4e-17 92.0 109 48.6
QL02p094741 Quercus lobata HOM05D000718 ORTHO05D003905 3.4e-17 92.0 115 46.1
DCAR_013154 Daucus carota HOM05D000718 ORTHO05D003905 5.7e-17 91.3 108 45.4
Glyma.06G228800 Glycine max HOM05D000718 ORTHO05D003905 7.5e-17 90.9 117 44.4
MELO3C025638.2 Cucumis melo HOM05D000718 ORTHO05D003905 9.8e-17 90.5 110 48.2
Manes.15G094700 Manihot esculenta HOM05D000718 ORTHO05D003905 9.8e-17 90.5 117 44.4
ClCG11G017470 Citrullus lanatus HOM05D000718 ORTHO05D003905 1.3e-16 90.1 116 45.7
FvH4_3g18311 Fragaria vesca HOM05D000718 ORTHO05D003905 1.3e-16 90.1 116 43.1
FAN11G1179 Fragaria x ananassa HOM05D000718 ORTHO05D003905 1.3e-16 90.1 116 43.1
FAN21G2233 Fragaria x ananassa HOM05D000718 ORTHO05D003905 1.3e-16 90.1 116 44.0
Oeu031031.1 Olea europaea HOM05D000718 ORTHO05D003905 1.3e-16 90.1 116 41.4
Lj3g0017131 Lotus japonicus HOM05D000718 ORTHO05D003905 1.7e-16 89.7 118 43.2
Sed0022037 Sechium edule HOM05D000718 ORTHO05D003905 1.7e-16 89.7 99 47.5
TWI39G1238 Tripterygium wilfordii HOM05D000718 ORTHO05D003905 1.7e-16 89.7 116 43.1
CiPaw.12G113500 Carya illinoinensis HOM05D000718 ORTHO05D003905 2.8e-16 89.0 117 40.2
CSS0040392 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D003905 4.8e-16 88.2 117 41.9
Haze_09325 Corylus avellana HOM05D000718 ORTHO05D003905 4.8e-16 88.2 116 43.1
Prupe.4G164900 Prunus persica HOM05D000718 ORTHO05D003905 4.8e-16 88.2 116 45.7
HPP92_021764 Vanilla planifolia HOM05D000718 ORTHO05D003905 8.3e-16 87.4 116 42.2
EL10Ac4g08342 Beta vulgaris HOM05D000718 ORTHO05D003905 1.1e-15 87.0 117 43.6
VMungo1127G1811 Vigna mungo HOM05D000718 ORTHO05D003905 1.1e-15 87.0 117 42.7
Gohir.D01G042754 Gossypium hirsutum HOM05D000718 ORTHO05D003905 1.4e-15 86.7 109 44.0
Gorai.002G060900 Gossypium raimondii HOM05D000718 ORTHO05D003905 1.4e-15 86.7 109 44.0
Gohir.A11G287641 Gossypium hirsutum HOM05D000718 ORTHO05D003905 1.8e-15 86.3 113 40.7
MD03G1243300 Malus domestica HOM05D000718 ORTHO05D003905 1.8e-15 86.3 117 41.0
vmacro09494 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 1.8e-15 86.3 113 46.0
Cc05_g11100 Coffea canephora HOM05D000718 ORTHO05D003905 2.4e-15 85.9 117 42.7
Lj8A148G36 Lonicera japonica HOM05D000718 ORTHO05D003905 2.4e-15 85.9 116 41.4
Phvul.011G162100 Phaseolus vulgaris HOM05D000718 ORTHO05D003905 2.4e-15 85.9 117 41.9
Eucgr.F03269 Eucalyptus grandis HOM05D000718 ORTHO05D003905 3.1e-15 85.5 117 43.6
Lj3g0020389 Lotus japonicus HOM05D000718 ORTHO05D003905 4.1e-15 85.1 118 40.7
Manes.03G101300 Manihot esculenta HOM05D000718 ORTHO05D003905 4.1e-15 85.1 117 40.2
CANSAT35G0358 Cannabis sativa HOM05D000718 ORTHO05D003905 7.0e-15 84.3 118 44.1
Gohir.A01G055000 Gossypium hirsutum HOM05D000718 ORTHO05D003905 7.0e-15 84.3 109 42.2
MD03G1242900 Malus domestica HOM05D000718 ORTHO05D003905 7.0e-15 84.3 117 41.9
Psat6g010040 Pisum sativum HOM05D000718 ORTHO05D003905 7.0e-15 84.3 118 43.2
Rhsim04G0026400 Rhododendron simsii HOM05D000718 ORTHO05D003905 7.0e-15 84.3 109 44.0
Eucgr.F04473 Eucalyptus grandis HOM05D000718 ORTHO05D003905 9.1e-15 84.0 111 45.0
RcHm_v2.0_Chr5g0030951 Rosa chinensis HOM05D000718 ORTHO05D003905 1.2e-14 83.6 116 42.2
Thecc.07G111100 Theobroma cacao HOM05D000718 ORTHO05D003905 1.2e-14 83.6 109 41.3
Cpa.g.c30496 Carica papaya HOM05D000718 ORTHO05D003905 1.6e-14 83.2 115 41.7
CsaV3_4G033130 Cucumis sativus L. HOM05D000718 ORTHO05D003905 1.6e-14 83.2 92 47.8
PSO229G0130 Papaver somniferum HOM05D000718 ORTHO05D003905 1.6e-14 83.2 102 47.1
PSO675G2989 Papaver somniferum HOM05D000718 ORTHO05D003905 1.6e-14 83.2 102 47.1
Solyc10g007330.1 Solanum lycopersicum HOM05D000718 ORTHO05D003905 1.6e-14 83.2 117 42.7
TWI39G1231 Tripterygium wilfordii HOM05D000718 ORTHO05D003905 1.6e-14 83.2 117 41.0
Duzib213G0085 Durio zibethinus HOM05D000718 ORTHO05D003905 2.0e-14 82.8 109 43.1
FAN25G3621 Fragaria x ananassa HOM05D000718 ORTHO05D003905 2.0e-14 82.8 116 40.5
Thecc.07G111200 Theobroma cacao HOM05D000718 ORTHO05D003905 2.0e-14 82.8 117 36.8
Duzib213G0325 Durio zibethinus HOM05D000718 ORTHO05D003905 3.5e-14 82.0 109 39.4
Nitab4.5_0000035g0180 Nicotiana tabacum HOM05D000718 ORTHO05D003905 4.5e-14 81.6 117 42.7
TWI38G1158 Tripterygium wilfordii HOM05D000718 ORTHO05D003905 4.5e-14 81.6 96 42.7
Sopen10g003140 Solanum pennellii HOM05D000718 ORTHO05D003905 5.9e-14 81.3 117 41.9
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 7.7e-14 80.9 100 45.0
MD03G1243400 Malus domestica HOM05D000718 ORTHO05D003905 7.7e-14 80.9 109 42.2
Thecc.07G110800 Theobroma cacao HOM05D000718 ORTHO05D003905 7.7e-14 80.9 109 39.4
FAN16G0238 Fragaria x ananassa HOM05D000718 ORTHO05D003905 1.3e-13 80.1 117 41.9
HanXRQChr13g0390381 Helianthus annuus HOM05D000718 ORTHO05D003905 1.3e-13 80.1 110 36.4
Duzib268G1121 Durio zibethinus HOM05D000718 ORTHO05D003905 1.7e-13 79.7 109 38.5
Gohir.D13G153800 Gossypium hirsutum HOM05D000718 ORTHO05D003905 1.7e-13 79.7 109 43.1
MSTRG.14962 Avicennia marina HOM05D000718 ORTHO05D003905 2.9e-13 79.0 116 37.9
Gohir.D13G153900 Gossypium hirsutum HOM05D000718 ORTHO05D003905 2.9e-13 79.0 101 39.6
Gorai.013G173800 Gossypium raimondii HOM05D000718 ORTHO05D003905 2.9e-13 79.0 101 39.6
Nitab4.5_0006953g0030 Nicotiana tabacum HOM05D000718 ORTHO05D003905 2.9e-13 79.0 117 40.2
SEGI_36027 Sequoiadendron giganteum HOM05D000718 ORTHO05D003905 2.9e-13 79.0 116 39.7
FvH4_3g18320 Fragaria vesca HOM05D000718 ORTHO05D003905 3.8e-13 78.6 117 41.0
FAN21G0298 Fragaria x ananassa HOM05D000718 ORTHO05D003905 3.8e-13 78.6 117 41.0
Nitab4.5_0003565g0030 Nicotiana tabacum HOM05D000718 ORTHO05D003905 3.8e-13 78.6 117 40.2
CAN.G375.13 Capsicum annuum HOM05D000718 ORTHO05D003905 5.0e-13 78.2 117 36.8
Peaxi162Scf00692g00513 Petunia axillaris HOM05D000718 ORTHO05D003905 5.0e-13 78.2 119 42.9
MD08G1248900 Malus domestica HOM05D000718 ORTHO05D003905 6.5e-13 77.8 89 46.1
Psat6g010080 Pisum sativum HOM05D000718 ORTHO05D003905 6.5e-13 77.8 118 39.8
CANSAT35G0553 Cannabis sativa HOM05D000718 ORTHO05D003905 8.5e-13 77.4 118 40.7
RcHm_v2.0_Chr5g0030961 Rosa chinensis HOM05D000718 ORTHO05D003905 8.5e-13 77.4 116 40.5
Eucgr.F03272 Eucalyptus grandis HOM05D000718 ORTHO05D003905 1.1e-12 77.0 99 46.5
Peaxi162Scf00111g01413 Petunia axillaris HOM05D000718 ORTHO05D003905 1.1e-12 77.0 118 38.1
Peaxi162Scf00122g00181 Petunia axillaris HOM05D000718 ORTHO05D003905 1.5e-12 76.6 116 40.5
PGSC0003DMG401021263 Solanum tuberosum HOM05D000718 ORTHO05D003905 1.5e-12 76.6 117 40.2
Gohir.A13G149401 Gossypium hirsutum HOM05D000718 ORTHO05D003905 1.9e-12 76.3 101 37.6
MD16G1147200 Malus domestica HOM05D000718 ORTHO05D003905 1.9e-12 76.3 89 46.1
TPR.G30481 Trifolium pratense HOM05D000718 ORTHO05D003905 1.9e-12 76.3 118 40.7
Nitab4.5_0021759g0010 Nicotiana tabacum HOM05D000718 ORTHO05D003905 2.5e-12 75.9 117 41.0
PGSC0003DMG400007072 Solanum tuberosum HOM05D000718 ORTHO05D003905 4.2e-12 75.1 116 36.2
Atru.chr2.2149 Acer truncatum HOM05D000718 ORTHO05D003905 5.5e-12 74.7 117 36.8
Medtr1g023035 Medicago truncatula HOM05D000718 ORTHO05D003905 5.5e-12 74.7 118 38.1
Os01g0207200 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D003905 7.2e-12 74.3 116 39.7
COL.COLO4_17553 Corchorus olitorius HOM05D000718 ORTHO05D003905 9.4e-12 73.9 89 42.7
Lsat_1_v5_gn_9_100000 Lactuca sativa HOM05D000718 ORTHO05D003905 1.2e-11 73.6 91 39.6
HPP92_024044 Vanilla planifolia HOM05D000718 ORTHO05D003905 1.2e-11 73.6 118 39.0
MSTRG.6676 Avicennia marina HOM05D000718 ORTHO05D003905 2.1e-11 72.8 116 37.1
Ciclev10023870m.g Citrus clementina HOM05D000718 ORTHO05D003905 2.1e-11 72.8 109 39.4
SGA_v2.0_scaffold47G17801 Striga asiatica HOM05D000718 ORTHO05D003905 2.1e-11 72.8 116 38.8
Eucgr.F03273 Eucalyptus grandis HOM05D000718 ORTHO05D003905 2.7e-11 72.4 99 42.4
Ah.04g164280 Amaranthus hybridus HOM05D000718 ORTHO05D003905 3.6e-11 72.0 100 41.0
SGA_v2.0_scaffold70G23378 Striga asiatica HOM05D000718 ORTHO05D003905 3.6e-11 72.0 117 35.9
Gohir.D11G305512 Gossypium hirsutum HOM05D000718 ORTHO05D003905 4.7e-11 71.6 113 34.5
Gorai.007G326900 Gossypium raimondii HOM05D000718 ORTHO05D003905 4.7e-11 71.6 113 34.5
RcHm_v2.0_Chr5g0030971 Rosa chinensis HOM05D000718 ORTHO05D003905 4.7e-11 71.6 116 38.8
Ca_23001_v3 Cicer arietinum L. HOM05D000718 ORTHO05D003905 6.1e-11 71.2 118 37.3
Migut.H01996 Erythranthe guttata HOM05D000718 ORTHO05D003905 8.0e-11 70.9 115 38.3
Sc16g0007560 Simmondsia chinensis HOM05D000718 ORTHO05D003905 8.0e-11 70.9 118 37.3
PGSC0003DMG400015387 Solanum tuberosum HOM05D000718 ORTHO05D003905 8.0e-11 70.9 117 39.3
CAN.G904.36 Capsicum annuum HOM05D000718 ORTHO05D003905 1.0e-10 70.5 117 35.0
PGR031G3118 Punica granatum HOM05D000718 ORTHO05D003905 1.0e-10 70.5 117 35.0
Aa31LG8G2130 Aethionema arabicum HOM05D000718 ORTHO05D002712 1.8e-10 69.7 103 38.8
Lalb_Chr19g0133791 Lupinus albus HOM05D000718 ORTHO05D003905 2.3e-10 69.3 116 35.3
Sabra11G0097100 Salix brachista HOM05D000718 ORTHO05D003905 2.3e-10 69.3 109 36.7
Medtr1g023030 Medicago truncatula HOM05D000718 ORTHO05D003905 3.0e-10 68.9 118 36.4
SGA_v2.0_scaffold31G12659 Striga asiatica HOM05D000718 ORTHO05D003905 3.0e-10 68.9 99 39.4
Zm00001eb338270 Zea mays HOM05D000718 ORTHO05D003905 3.0e-10 68.9 116 38.8
CARHR089860 Cardamine hirsuta HOM05D000718 ORTHO05D003905 4.0e-10 68.6 100 37.0
THA.LOC104804736 Tarenaya hassleriana HOM05D000718 ORTHO05D003905 5.2e-10 68.2 101 39.6
C03p47320 Brassica napus HOM05D000718 ORTHO05D003905 8.8e-10 67.4 100 39.0
DCAR_017171 Daucus carota HOM05D000718 ORTHO05D003905 8.8e-10 67.4 73 47.9
Sp3g13130 Schrenkiella parvula HOM05D000718 ORTHO05D003905 8.8e-10 67.4 100 35.0
HanXRQChr15g0476221 Helianthus annuus HOM05D000718 ORTHO05D003905 2.0e-09 66.2 115 31.3
Sopen12g006060 Solanum pennellii HOM05D000718 ORTHO05D003905 2.6e-09 65.9 117 38.5
SEGI_26604 Sequoiadendron giganteum HOM05D000718 ORTHO05D003905 3.4e-09 65.5 101 37.6
BcaC01g03912 Brassica carinata HOM05D000718 ORTHO05D003905 4.4e-09 65.1 100 38.0
A01p38930 Brassica napus HOM05D000718 ORTHO05D003905 4.4e-09 65.1 100 35.0
BolC3t17002H Brassica oleracea HOM05D000718 ORTHO05D003905 4.4e-09 65.1 100 38.0
ECA240G0560 Erigeron canadensis HOM05D000718 ORTHO05D003905 5.7e-09 64.7 92 37.0
BcaB04g20956 Brassica carinata HOM05D000718 ORTHO05D003905 7.5e-09 64.3 100 36.0
Thhalv10022319m.g Eutrema salsugineum HOM05D000718 ORTHO05D002712 7.5e-09 64.3 100 36.0
Solyc12g014270.3 Solanum lycopersicum HOM05D000718 ORTHO05D003905 7.5e-09 64.3 98 42.9
BraA01t03941Z Brassica rapa HOM05D000718 ORTHO05D003905 9.8e-09 63.9 100 36.0
Ciclev10020934m.g Citrus clementina HOM05D000718 ORTHO05D003905 9.8e-09 63.9 117 34.2
C01p49560 Brassica napus HOM05D000718 ORTHO05D003905 1.7e-08 63.2 100 35.0
BolC1t04911H Brassica oleracea HOM05D000718 ORTHO05D003905 1.7e-08 63.2 100 35.0
AL3G27240 Arabidopsis lyrata HOM05D000718 ORTHO05D003905 2.2e-08 62.8 100 35.0
AT3G14920 Arabidopsis thaliana HOM05D000718 ORTHO05D003905 3.7e-08 62.0 100 34.0
BcaC09g48457 Brassica carinata HOM05D000718 ORTHO05D003905 3.7e-08 62.0 92 35.9
Carub.0003s1458 Capsella rubella HOM05D000718 ORTHO05D003905 6.3e-08 61.2 100 35.0
Aqoxy1G02040 Aquilegia oxysepala HOM05D000718 ORTHO05D003905 8.3e-08 60.8 61 47.5
A03p39050 Brassica napus HOM05D000718 ORTHO05D003905 8.3e-08 60.8 100 36.0
BraA03t13054Z Brassica rapa HOM05D000718 ORTHO05D003905 1.8e-07 59.7 100 36.0
HPP92_005195 Vanilla planifolia HOM05D000718 ORTHO05D003905 3.1e-07 58.9 85 41.2
PSO339G4450 Papaver somniferum HOM05D000718 ORTHO05D003905 4.1e-07 58.5 104 35.6
Solyc07g062460.4 Solanum lycopersicum HOM05D000718 ORTHO05D003905 2.0e-06 56.2 115 32.2
CDE11G1161 Ceratophyllum demersum HOM05D000718 ORTHO05D003905 4.5e-06 55.1 105 35.2


User provided reference genes

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