Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 3.9e-105 384.8 191 100.0
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 93.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.3e-100 369.8 191 94.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.2
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 94.8
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.2e-100 369.0 190 94.7
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 93.7
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 93.7
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 93.2
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.1e-99 366.7 191 92.1
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 93.7
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 93.7
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 91.1
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 93.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 93.2
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 92.1
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.9e-99 365.9 190 92.6
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 93.7
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 92.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 2.4e-99 365.5 191 92.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 93.2
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.7
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 3.2e-99 365.2 189 94.2
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 93.2
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.1
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 93.2
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 93.2
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 93.2
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 91.6
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.1
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 92.1
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 92.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 92.1
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 92.6
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 91.0
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 9.2e-99 363.6 188 93.1
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 92.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.2e-98 363.2 189 91.0
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.6
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.6
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 91.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 92.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.7
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.7
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 91.6
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.7e-98 362.1 189 93.1
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 92.6
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 92.6
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 92.6
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.5e-98 361.7 195 91.8
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 92.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 91.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 91.1
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.0e-97 360.1 189 92.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.7e-97 359.4 189 92.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 2.3e-97 359.0 188 91.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 90.1
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 90.1
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 8.6e-97 357.1 189 89.9
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 92.0
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 90.1
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 3.3e-96 355.1 191 88.0
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 4.3e-96 354.8 191 89.0
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 4.3e-96 354.8 193 89.1
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 5.6e-96 354.4 191 89.0
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 9.5e-96 353.6 188 88.8
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.1e-95 352.4 188 91.0
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.8e-95 352.1 191 86.4
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.8e-95 352.1 210 83.8
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 2.8e-95 352.1 191 86.9
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 4.7e-95 351.3 201 86.1
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 6.2e-95 350.9 201 86.6
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.1e-94 350.1 191 85.9
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.1e-94 350.1 191 86.4
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 4.0e-94 348.2 216 80.1
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 6.8e-94 347.4 198 85.9
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 88.3
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.2e-93 346.7 183 90.2
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 2.0e-93 345.9 191 84.8
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.6e-93 345.5 189 85.2
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 5.8e-93 344.4 232 76.7
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 5.8e-93 344.4 191 83.8
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 7.5e-93 344.0 191 84.3
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 9.8e-93 343.6 191 83.8
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.7e-92 342.8 189 87.3
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 2.2e-92 342.4 188 84.6
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.9e-92 342.0 188 84.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 6.4e-92 340.9 188 84.0
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 8.3e-92 340.5 188 84.0
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-91 340.1 188 83.5
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.9e-91 339.3 214 79.0
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 7.1e-91 337.4 191 82.7
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 7.1e-91 337.4 188 84.0
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.2e-91 337.0 191 81.7
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.1e-88 330.1 189 79.9
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.5e-88 329.7 173 91.3
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.9e-88 329.3 191 79.1
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.3e-88 328.2 189 79.4
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 8.1e-87 323.9 191 78.0
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 1.1e-86 323.6 173 89.6
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 8.9e-86 320.5 181 86.2
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 8.9e-86 320.5 181 86.2
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 4.4e-85 318.2 191 79.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.9e-84 314.7 188 77.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.2e-83 312.0 188 75.5
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 2.1e-82 309.3 167 91.0
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 6.6e-81 304.3 160 90.6
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.6e-79 299.7 160 89.4
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 3.1e-78 295.4 160 88.8
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.4e-75 286.6 161 87.6
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 4.6e-74 281.6 171 80.7
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.3e-72 275.0 209 68.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 9.9e-69 263.8 188 67.6
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.0e-62 241.9 188 63.3
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 5.3e-62 241.5 140 83.6
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.3e-57 226.1 183 60.1
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.5e-56 222.6 206 51.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.6e-56 220.7 149 73.8
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.6e-55 219.9 113 91.2
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.5e-53 213.4 129 83.7
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 3.8e-52 208.8 112 88.4
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.1e-51 204.5 109 91.7
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 9.3e-51 204.1 109 91.7
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.7e-50 202.6 106 85.8
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 6.0e-50 201.4 109 89.0
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.1e-48 197.2 158 62.7
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.4e-38 162.9 82 92.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 2.4e-38 162.9 82 91.5
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.1e-38 162.5 82 91.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 6.9e-38 161.4 80 92.5
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.6e-37 159.5 83 88.0
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 6.5e-36 154.8 84 91.7
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.6e-34 149.1 157 46.5
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 1.4e-33 147.1 81 88.9
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.5e-32 143.7 74 89.2
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 4.1e-30 135.6 71 84.5
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 9.1e-30 134.4 71 87.3
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 5.5e-27 125.2 87 77.0
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 3.0e-25 119.4 68 79.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 3.0e-25 119.4 68 79.4
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 8.8e-25 117.9 68 77.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 6.7e-17 91.7 51 76.5
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.5e-16 90.5 47 85.1
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 37 89.2


User provided reference genes

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