Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.9e-154 548.1 281 100.0
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.2e-115 420.2 269 80.3
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 1.0e-114 417.2 271 75.6
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.3e-113 412.1 271 76.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.3e-113 412.1 271 76.0
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 4.1e-111 405.2 271 75.6
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 6.9e-111 404.4 271 74.9
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.2e-110 403.7 272 75.0
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 5.9e-110 401.4 271 74.9
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 7.6e-110 401.0 271 74.5
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 2.2e-109 399.4 272 74.3
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 2.9e-109 399.1 272 74.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.1e-108 397.1 271 74.9
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 4.2e-108 395.2 271 73.8
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 7.2e-108 394.4 271 73.8
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 9.3e-108 394.0 273 75.1
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.3e-106 390.2 271 73.1
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.3e-106 390.2 272 72.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.8e-106 389.8 272 72.1
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.8e-106 389.8 272 72.4
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.8e-106 389.8 272 72.4
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 3.0e-106 389.0 271 72.7
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 3.0e-106 389.0 273 72.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.9e-106 388.7 271 72.0
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.5e-105 386.7 271 72.3
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 2.5e-105 386.0 271 71.6
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 3.3e-105 385.6 272 72.4
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 4.3e-105 385.2 271 72.0
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 7.4e-105 384.4 272 71.7
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 9.7e-105 384.0 272 70.6
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.3e-104 383.6 271 70.8
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.6e-104 383.3 271 71.6
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 3.7e-104 382.1 272 71.0
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.1e-103 380.6 272 70.6
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.4e-103 380.2 300 68.0
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.4e-103 380.2 272 70.6
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.4e-103 379.4 271 70.1
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 3.1e-103 379.0 271 70.8
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 3.1e-103 379.0 273 70.7
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 3.1e-103 379.0 273 70.7
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 4.1e-103 378.6 272 70.6
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 5.3e-103 378.3 271 70.8
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.2e-102 377.1 273 70.7
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.6e-102 375.9 271 71.2
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 4.5e-102 375.2 271 70.8
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.9e-102 374.8 272 69.9
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 1.0e-101 374.0 271 71.2
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.3e-101 373.6 238 77.3
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 3.8e-101 372.1 271 70.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.8e-101 372.1 297 65.7
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 5.0e-101 371.7 275 68.7
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.5e-101 370.9 271 70.1
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.1e-100 370.5 271 70.1
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.1e-100 370.5 271 70.1
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.1e-100 370.5 271 69.4
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.1e-100 370.5 271 68.6
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.4e-100 370.2 271 70.1
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.9e-100 369.8 271 70.1
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 4.2e-100 368.6 271 69.4
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 5.5e-100 368.2 263 73.4
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 5.5e-100 368.2 271 69.4
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 7.2e-100 367.9 293 64.5
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 7.2e-100 367.9 269 70.6
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.1e-99 366.3 271 69.4
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 6.1e-99 364.8 272 68.4
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.0e-98 364.0 271 70.1
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.4e-98 363.6 272 68.0
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 1.8e-98 363.2 305 64.6
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 3.0e-98 362.5 283 68.2
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 3.0e-98 362.5 283 68.2
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.1e-98 361.7 273 68.5
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.1e-97 360.5 272 67.3
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.5e-97 360.1 271 67.2
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 3.3e-97 359.0 301 62.8
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 9.7e-97 357.5 273 67.0
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 9.7e-97 357.5 275 68.0
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 2.8e-96 355.9 272 66.9
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 3.7e-96 355.5 272 68.4
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 4.8e-96 355.1 283 67.1
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 3.1e-95 352.4 271 65.7
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.5e-94 350.1 271 66.4
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 5.9e-94 348.2 238 73.1
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 5.0e-93 345.1 263 68.8
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.9e-92 343.2 331 56.5
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 7.2e-92 341.3 272 65.1
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.2e-91 340.5 275 66.2
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.1e-91 339.7 272 65.4
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 3.6e-91 339.0 272 67.6
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 6.1e-91 338.2 282 65.2
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.4e-90 337.0 273 64.5
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.8e-90 336.7 271 65.3
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 3.0e-90 335.9 271 63.1
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 5.7e-89 331.6 272 62.9
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 5.7e-89 331.6 277 63.2
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 7.4e-89 331.3 238 69.3
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.7e-88 330.1 272 65.4
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.4e-87 326.2 272 61.8
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 5.3e-87 325.1 271 65.3
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.2e-86 323.9 273 63.0
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.6e-86 323.6 272 63.6
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 4.5e-86 322.0 273 62.3
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 5.9e-86 321.6 239 68.2
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 5.9e-86 321.6 273 62.3
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 2.2e-85 319.7 274 62.0
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 4.2e-84 315.5 287 58.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 4.2e-84 315.5 265 63.4
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 5.5e-84 315.1 272 60.3
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 9.4e-84 314.3 271 61.6
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 4.7e-83 312.0 275 61.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 1.0e-82 310.8 273 61.2
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.5e-81 307.0 272 59.6
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 7.5e-81 304.7 277 58.1
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 9.7e-81 304.3 196 76.0
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.2e-80 303.1 266 61.7
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.4e-79 300.4 265 60.8
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.4e-79 300.4 209 71.3
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 7.0e-79 298.1 316 54.1
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 4.0e-74 282.3 284 54.2
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 4.4e-73 278.9 290 56.2
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.3e-72 277.3 280 55.4
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 5.0e-69 265.4 232 62.1
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.5e-69 265.0 273 53.5
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 6.5e-69 265.0 271 55.4
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.2e-67 260.8 271 55.4
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.2e-65 254.2 229 58.5
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.6e-65 253.1 193 69.9
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.6e-65 253.1 255 53.3
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.4e-65 252.7 271 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 7.5e-65 251.5 220 59.1
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.2e-64 250.0 219 63.5
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 7.0e-63 245.0 264 53.0
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.3e-61 240.0 273 51.3
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 8.6e-61 238.0 256 55.5
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 3.3e-60 236.1 184 65.2
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 9.5e-60 234.6 183 67.8
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.1e-59 233.4 186 67.7
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 8.0e-59 231.5 197 60.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.0e-58 231.1 274 49.3
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.8e-55 220.3 271 49.1
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 3.0e-53 213.0 305 44.6
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.3e-48 197.6 176 61.9
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.7e-48 197.2 298 40.9
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 3.2e-47 193.0 312 41.0
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 4.3e-44 182.6 124 72.6
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.3e-42 176.8 240 42.9
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.7e-32 144.1 104 71.2
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.3e-29 134.4 90 73.3
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 8.1e-27 125.2 216 38.4
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.8e-26 124.0 79 74.7
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 5.6e-20 102.4 130 43.8
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 7.3e-20 102.1 170 43.5
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 6.2e-19 99.0 265 34.7
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 7.6e-17 92.0 60 70.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 4.6e-14 82.8 311 28.0
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.1e-13 79.3 77 58.4
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 6.9e-10 68.9 58 62.1
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 7.1e-07 58.9 44 61.4
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.5e-06 56.6 40 62.5
SEGI_36601 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 4.6e-06 56.2 42 57.1


User provided reference genes

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