Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 3.1e-153 546.2 587 100.0
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 2.0e-56 224.6 188 63.8
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 1.0e-55 222.2 341 58.4
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 5.0e-55 219.9 341 58.1
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 2.5e-54 217.6 219 52.5
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 6.2e-53 213.0 209 55.0
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 8.1e-53 212.6 226 52.2
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 3.1e-52 210.7 327 59.9
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 4.1e-49 200.3 203 52.2
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 9.2e-49 199.1 203 53.2
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 5.1e-47 193.4 209 50.2
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 9.5e-46 189.1 230 48.7
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.2e-45 188.7 201 49.3
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 2.8e-45 187.6 208 50.0
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 3.6e-45 187.2 198 49.0
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.3e-44 184.5 190 53.2
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.3e-44 184.5 190 53.2
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 2.3e-44 184.5 201 48.8
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 8.9e-44 182.6 184 53.8
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 1.2e-43 182.2 326 45.1
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 9.9e-43 179.1 209 47.4
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 3.8e-42 177.2 203 48.3
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 8.4e-42 176.0 228 43.9
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 3.2e-41 174.1 195 45.6
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 5.4e-41 173.3 178 53.9
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 1.2e-40 172.2 178 53.4
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 2.1e-40 171.4 157 51.6
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 4.6e-40 170.2 186 51.6
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 4.6e-40 170.2 208 44.7
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 1.3e-39 168.7 206 49.0
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 2.3e-39 167.9 183 51.9
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 2.5e-38 164.5 154 53.9
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 4.3e-38 163.7 193 47.2
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 9.6e-38 162.5 164 49.4
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 1.6e-37 161.8 164 51.8
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 3.6e-37 160.6 155 54.2
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 4.7e-37 160.2 163 48.5
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 6.2e-37 159.8 165 46.7
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 8.1e-37 159.5 189 45.0
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.8e-36 158.3 209 42.6
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.8e-36 158.3 167 46.1
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.4e-36 157.9 155 50.3
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 4.0e-36 157.1 202 41.6
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 6.9e-36 156.4 154 49.4
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 8.9e-36 156.0 190 44.2
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 8.9e-36 156.0 235 37.4
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.0e-35 154.8 164 52.4
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.6e-35 154.5 182 43.4
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 2.6e-35 154.5 155 50.3
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 5.8e-35 153.3 181 44.2
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.3e-34 152.1 156 49.4
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 3.8e-34 150.6 191 44.0
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 4.9e-34 150.2 165 49.7
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 4.9e-34 150.2 185 44.3
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 8.4e-34 149.4 192 45.8
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 9.3e-33 146.0 187 44.9
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 9.3e-33 146.0 155 46.5
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.2e-32 145.6 156 50.0
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.2e-32 145.6 160 49.4
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 1.2e-32 145.6 190 46.8
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.6e-32 145.2 185 42.7
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.6e-32 145.2 185 42.7
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 2.1e-32 144.8 186 44.1
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 3.5e-32 144.1 185 42.7
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.5e-32 144.1 159 50.3
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 4.6e-32 143.7 185 42.7
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 6.0e-32 143.3 185 43.8
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 6.0e-32 143.3 214 42.5
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 7.8e-32 142.9 156 48.1
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 7.8e-32 142.9 151 49.0
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 1.0e-31 142.5 193 40.9
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 1.7e-31 141.7 186 43.5
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.7e-31 141.7 185 44.9
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 2.3e-31 141.4 184 44.0
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 5.1e-31 140.2 185 43.2
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 6.6e-31 139.8 185 41.6
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 6.6e-31 139.8 203 39.9
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.5e-30 138.7 204 42.2
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 4.3e-30 137.1 162 48.8
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 4.3e-30 137.1 157 42.7
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 2.8e-29 134.4 166 46.4
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 2.8e-29 134.4 156 42.9
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 1.1e-28 132.5 161 45.3
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.4e-28 131.3 160 48.1
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 2.4e-28 131.3 202 40.6
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 2.4e-28 131.3 281 42.7
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 3.1e-28 131.0 154 45.5
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 5.3e-28 130.2 165 42.4
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 9.0e-28 129.4 164 43.3
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.2e-27 129.0 156 42.9
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 3.4e-27 127.5 154 46.1
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 4.5e-27 127.1 128 46.1
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 2.2e-26 124.8 148 41.2
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 3.8e-26 124.0 166 45.8
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 3.8e-26 124.0 166 45.8
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 4.9e-26 123.6 166 45.8
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 8.4e-26 122.9 91 61.5
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 8.4e-26 122.9 163 43.6
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 1.1e-25 122.5 113 54.9
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.4e-25 120.2 162 43.2
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.4e-25 120.2 162 43.2
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 9.3e-25 119.4 163 42.9
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 1.2e-24 119.0 194 36.6
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 1.6e-24 118.6 162 42.6
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 3.5e-24 117.5 149 42.3
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 6.0e-24 116.7 167 45.5
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 1.0e-23 115.9 159 42.1
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.3e-23 115.5 137 44.5
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.1e-22 112.5 162 39.5
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.3e-22 110.9 162 38.9
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 9.6e-22 109.4 167 43.7
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.2e-19 102.4 128 43.0
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 8.4e-18 96.3 139 43.9
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 5.1e-15 87.0 134 39.6
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 8.2e-13 79.7 78 46.2
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.1e-12 79.3 85 44.7
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 3.2e-09 67.8 65 50.8
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 1.2e-08 65.9 83 49.4
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 4.6e-08 63.9 203 26.6
SEGI_12554 Sequoiadendron giganteum HOM05D006080 ORTHO05D007382 2.5e-06 58.2 153 29.4
ATR0697G176 Amborella trichopoda HOM05D000104 ORTHO05D026583 4.3e-06 57.4 146 27.4
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 4.3e-06 57.4 134 26.1
AagrBONN_evm.TU.Sc2ySwM_362.393 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-06 56.2 92 32.6
MSTRG.20350 Avicennia marina HOM05D000001 ORTHO05D000003 9.7e-06 56.2 90 36.7
A06p13530 Brassica napus HOM05D000001 ORTHO05D009948 9.7e-06 56.2 101 31.7


User provided reference genes

Program Settings