Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.2e-226 789.6 442 100.0
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.8e-142 510.0 433 66.3
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.5e-128 461.5 433 62.1
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.3e-108 397.5 449 54.1
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.6e-104 383.3 440 54.1
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 7.6e-104 381.7 440 53.9
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.7e-103 380.6 425 54.4
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.0e-100 371.3 444 49.8
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.1e-100 369.0 438 53.9
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.1e-99 367.9 435 52.0
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.1e-98 363.6 440 52.0
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.1e-98 363.6 456 53.1
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.6e-96 356.7 456 51.1
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.4e-94 350.9 437 51.5
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.4e-94 350.9 437 51.5
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.1e-92 342.4 446 50.2
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.1e-91 341.3 441 49.0
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.5e-91 340.1 449 50.1
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 5.6e-91 339.0 429 50.6
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.6e-90 337.4 439 49.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.1e-90 337.0 438 49.3
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.8e-90 336.7 440 49.1
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 3.6e-90 336.3 445 47.6
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.4e-89 334.3 442 49.5
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.8e-89 334.0 451 50.8
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.9e-89 332.0 439 47.4
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 3.4e-88 329.7 446 47.3
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.9e-87 326.6 454 46.0
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 3.8e-87 326.2 440 49.1
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 2.4e-86 323.6 441 49.2
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.4e-86 323.6 321 65.7
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.1e-85 320.5 447 47.7
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 4.6e-85 319.3 424 47.4
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 7.9e-85 318.5 400 50.5
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.0e-84 318.2 444 47.5
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 3.0e-84 316.6 436 46.1
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.1e-84 315.8 442 46.6
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.5e-83 314.3 446 46.6
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 1.9e-83 313.9 439 46.7
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.5e-83 313.5 323 56.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.3e-82 311.2 439 47.6
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.3e-82 311.2 372 52.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.3e-82 311.2 436 47.0
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.6e-82 309.7 446 47.1
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 4.8e-82 309.3 414 49.8
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.4e-81 307.8 437 46.7
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 3.1e-81 306.6 404 49.0
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 4.0e-81 306.2 439 45.3
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.0e-81 306.2 439 44.6
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 4.0e-81 306.2 442 46.4
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 4.0e-81 306.2 438 48.2
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 6.9e-81 305.4 446 46.9
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.3e-79 301.2 442 44.3
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 2.1e-77 293.9 447 44.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 3.5e-77 293.1 437 46.2
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 6.0e-77 292.4 448 44.9
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.1e-75 288.1 412 45.4
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.9e-75 287.3 436 43.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.9e-75 287.3 474 41.1
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.9e-75 287.3 451 43.5
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.5e-75 287.0 437 45.5
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 4.3e-75 286.2 429 45.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 6.2e-74 282.3 448 44.2
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.4e-73 281.2 435 46.4
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 4.0e-73 279.6 435 46.0
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 9.0e-73 278.5 462 42.9
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.6e-72 276.9 464 43.5
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.1e-70 271.6 438 46.6
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.1e-70 271.6 405 46.4
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 4.2e-70 269.6 438 42.5
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.2e-69 268.1 396 45.5
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.9e-67 260.8 459 42.9
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-67 260.8 390 43.6
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-67 260.8 390 43.6
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 3.3e-67 260.0 437 44.9
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 2.1e-66 257.3 306 55.9
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 2.8e-66 256.9 395 44.6
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.4e-65 254.6 424 44.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.2e-64 251.5 397 44.1
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 2.0e-64 250.8 440 43.0
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.1e-62 245.0 454 39.4
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.4e-62 244.6 334 46.7
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 1.9e-62 244.2 439 42.4
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 3.2e-62 243.4 397 43.6
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.6e-61 241.1 440 41.1
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 6.1e-61 239.2 382 42.1
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 3.0e-60 236.9 448 40.8
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 8.7e-60 235.3 439 41.5
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 1.1e-59 235.0 439 39.6
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.5e-59 234.6 428 37.1
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 6.9e-57 225.7 437 38.7
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 9.0e-57 225.3 353 45.0
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 8.5e-55 218.8 521 33.4
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-54 218.4 433 39.0
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.9e-54 217.6 136 83.8
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 4.2e-54 216.5 453 39.3
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 6.1e-53 212.6 455 36.5
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.8e-52 211.1 447 36.2
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 6.7e-52 209.1 437 35.5
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.1e-51 208.4 455 35.8
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.5e-51 207.2 290 46.6
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.3e-51 206.5 288 49.7
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 5.7e-51 206.1 439 36.9
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 6.3e-50 202.6 332 41.3
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 1.4e-49 201.4 306 44.8
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.4e-49 201.4 436 36.9
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.5e-48 198.0 419 36.8
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.3e-47 194.9 327 38.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 5.0e-47 193.0 454 34.4
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 4.2e-46 189.9 421 36.8
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 9.4e-46 188.7 424 37.0
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 2.1e-45 187.6 444 33.8
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.1e-45 187.6 406 38.7
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 8.8e-44 182.2 368 36.7
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 2.6e-43 180.6 426 35.4
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 9.7e-43 178.7 454 35.0
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 9.7e-43 178.7 338 39.3
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.1e-38 165.2 430 34.4
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.1e-38 165.2 425 34.1
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.5e-38 164.9 424 34.0
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.5e-38 164.9 441 33.8
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 7.2e-38 162.5 435 34.3
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 6.1e-37 159.5 387 35.1
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 7.5e-35 152.5 424 32.5
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 7.5e-35 152.5 424 32.8
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 9.7e-35 152.1 438 32.4
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 9.7e-35 152.1 313 37.7
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 3.5e-32 143.7 428 31.5
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.8e-31 140.2 438 31.7
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.9e-30 137.9 187 48.7
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.1e-29 134.4 260 36.9
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.5e-27 125.9 210 41.9
Nn2g13771 Nelumbo nucifera HOM05D067471 ORTHO05D005785 1.8e-25 121.3 78 78.2
Nn8g40577 Nelumbo nucifera HOM05D067471 ORTHO05D005785 1.8e-25 121.3 78 78.2
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 2.0e-24 117.9 109 56.9
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 4.5e-24 116.7 124 58.1
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.1e-22 112.1 97 54.6
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 2.1e-21 107.8 111 55.9
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 6.1e-21 106.3 248 35.1
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 3.4e-19 100.5 120 50.8
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 5.4e-17 93.2 71 60.6
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.0e-12 79.0 82 54.9
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 1.7e-10 71.6 348 24.7
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.9e-10 70.1 62 59.7
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.7e-08 64.3 85 36.5
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 1.7e-07 61.6 163 33.7
AagrBONN_evm.TU.Sc2ySwM_228.2778 Anthoceros agrestis HOM05D019331 ORTHO05D005785 1.5e-06 58.5 85 38.8


User provided reference genes

Program Settings