Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 5.1e-118 427.9 244 100.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 5.6e-93 344.7 246 78.0
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 2.8e-92 342.4 246 78.0
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 9.0e-91 337.4 246 82.9
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 1.2e-90 337.0 247 78.1
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 6.5e-89 331.3 247 73.7
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 8.4e-89 330.9 246 67.9
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 8.4e-89 330.9 247 77.7
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 3.2e-88 328.9 242 74.4
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 3.2e-88 328.9 250 79.6
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 7.1e-88 327.8 244 74.6
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 9.3e-88 327.4 246 74.0
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 9.3e-88 327.4 245 67.3
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.6e-87 326.6 245 77.1
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 2.1e-87 326.2 249 77.1
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 2.1e-87 326.2 247 79.8
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.7e-87 325.9 249 77.1
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 4.6e-87 325.1 243 73.3
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 4.6e-87 325.1 250 78.4
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 4.6e-87 325.1 279 61.3
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.0e-86 323.9 279 67.7
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 1.8e-86 323.2 247 77.7
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 3.0e-86 322.4 241 78.4
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 3.0e-86 322.4 243 77.8
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 6.7e-86 321.2 257 64.2
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 8.7e-86 320.9 249 72.3
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 8.7e-86 320.9 244 75.8
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 1.5e-85 320.1 247 78.5
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 1.5e-85 320.1 246 72.8
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 2.5e-85 319.3 245 72.7
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 3.3e-85 318.9 254 74.0
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.3e-85 318.9 186 83.9
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 7.4e-85 317.8 179 85.5
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 9.7e-85 317.4 245 76.7
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 1.3e-84 317.0 249 78.7
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 2.2e-84 316.2 277 67.1
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 2.8e-84 315.8 187 81.8
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 4.8e-84 315.1 178 84.8
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 4.8e-84 315.1 180 85.0
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 6.3e-84 314.7 243 76.5
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 1.1e-83 313.9 243 75.3
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 1.8e-83 313.2 180 82.8
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 3.1e-83 312.4 178 84.3
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 4.1e-83 312.0 248 77.0
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 4.1e-83 312.0 249 69.5
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 4.1e-83 312.0 186 79.6
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.2e-82 310.5 186 79.0
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 1.5e-82 310.1 243 75.7
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 2.0e-82 309.7 243 77.0
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 2.0e-82 309.7 181 80.1
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 2.6e-82 309.3 187 80.7
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 2.6e-82 309.3 300 61.3
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 3.4e-82 308.9 245 66.5
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 5.9e-82 308.1 228 72.8
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 7.6e-82 307.8 244 75.4
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.0e-81 307.4 180 82.2
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.7e-81 306.6 182 80.8
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 6.5e-81 304.7 180 80.6
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 6.5e-81 304.7 254 71.7
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 1.1e-80 303.9 185 79.5
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 2.5e-80 302.8 275 60.4
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 2.5e-80 302.8 249 73.5
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 3.2e-80 302.4 243 73.3
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 7.2e-80 301.2 244 74.2
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.2e-79 300.4 275 67.3
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.1e-79 299.7 300 55.0
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 3.6e-79 298.9 273 67.8
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 4.6e-79 298.5 244 66.8
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 6.1e-79 298.1 168 83.3
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 2.3e-78 296.2 184 77.7
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 5.1e-78 295.0 249 65.1
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 5.1e-78 295.0 168 82.7
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 1.5e-77 293.5 163 85.3
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.5e-77 293.5 179 77.1
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.5e-77 292.7 318 50.9
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.3e-77 292.4 169 82.2
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.3e-77 292.4 170 81.8
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.8e-75 286.6 247 69.2
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 2.2e-73 279.6 163 79.8
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.2e-73 279.6 271 58.3
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 3.6e-71 272.3 306 52.0
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 6.1e-71 271.6 146 88.4
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 4.4e-69 265.4 212 65.1
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.4e-67 260.4 145 85.5
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 1.5e-66 256.9 151 79.5
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.5e-66 256.9 191 66.0
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 7.7e-66 254.6 164 76.2
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.7e-65 253.4 204 64.7
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 6.5e-65 251.5 180 65.0
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 1.1e-64 250.8 150 80.7
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 9.4e-64 247.7 187 63.1
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 9.4e-64 247.7 199 65.3
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 6.1e-63 245.0 248 60.1
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.8e-59 233.4 256 64.5
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 9.1e-59 231.1 281 60.9
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 1.5e-56 223.8 285 47.7
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 6.7e-54 214.9 350 39.7
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 2.0e-53 213.4 169 83.4
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 7.5e-53 211.5 125 79.2
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.3e-52 210.7 265 46.4
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 9.1e-51 204.5 154 66.9
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 2.0e-50 203.4 189 53.4
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.3e-49 200.7 131 73.3
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 3.1e-43 179.5 115 75.7
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 5.0e-41 172.2 124 66.9
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 4.7e-39 165.6 113 68.1
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 2.2e-36 156.8 100 75.0
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 4.5e-34 149.1 145 57.2
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 1.6e-31 140.6 81 81.5
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 6.0e-26 122.1 175 61.1
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 3.0e-25 119.8 107 60.7
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 6.4e-20 102.1 120 68.3
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 1.4e-19 100.9 112 51.8
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 3.9e-09 66.2 38 78.9
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 5.1e-09 65.9 34 91.2
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.8e-07 60.1 37 73.0
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 4.7e-07 59.3 31 90.3


User provided reference genes

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