Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.9e-95 352.4 172 100.0
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.8e-61 239.6 133 82.7
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 5.2e-61 238.0 126 87.3
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 9.9e-60 233.8 133 78.9
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 9.9e-60 233.8 133 78.9
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.7e-59 233.0 133 78.9
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 2.2e-59 232.6 133 79.7
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 3.8e-59 231.9 133 79.7
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 4.9e-59 231.5 133 78.9
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.9e-58 229.6 133 77.4
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 7.1e-58 227.6 133 78.2
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 1.2e-57 226.9 133 77.4
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.2e-57 226.9 133 77.4
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.2e-57 226.9 133 77.4
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.2e-57 226.9 133 77.4
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.7e-57 225.7 133 76.7
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 2.7e-57 225.7 133 76.7
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 3.5e-57 225.3 133 76.7
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 3.5e-57 225.3 133 76.7
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 4.6e-57 224.9 133 74.4
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 1.0e-56 223.8 133 77.4
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 1.3e-56 223.4 130 75.4
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.7e-56 223.0 130 76.2
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 3.9e-56 221.9 133 74.4
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 5.1e-56 221.5 131 76.3
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 5.1e-56 221.5 130 74.6
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 5.1e-56 221.5 156 67.3
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 8.7e-56 220.7 133 73.7
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 8.7e-56 220.7 135 72.6
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 1.1e-55 220.3 133 72.9
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.1e-55 220.3 133 72.9
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 1.5e-55 219.9 130 76.2
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 1.5e-55 219.9 130 74.6
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.5e-55 219.9 133 74.4
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.9e-55 219.5 129 76.7
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 1.9e-55 219.5 133 75.9
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 3.3e-55 218.8 135 74.8
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 4.3e-55 218.4 130 73.1
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 5.6e-55 218.0 129 76.7
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 5.6e-55 218.0 130 73.8
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 7.3e-55 217.6 130 73.1
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 9.6e-55 217.2 130 73.1
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 9.6e-55 217.2 133 74.4
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.6e-54 216.5 133 70.7
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 1.6e-54 216.5 130 73.8
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 2.1e-54 216.1 133 72.2
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 2.1e-54 216.1 133 72.2
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 2.1e-54 216.1 133 71.4
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 2.1e-54 216.1 133 74.4
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 3.6e-54 215.3 134 72.4
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 4.8e-54 214.9 133 69.2
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 6.2e-54 214.5 129 72.9
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 8.1e-54 214.2 134 71.6
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 1.1e-53 213.8 133 74.4
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.8e-53 213.0 133 70.7
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 4.0e-53 211.8 135 73.3
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 4.0e-53 211.8 135 73.3
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 4.0e-53 211.8 133 69.2
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 5.3e-53 211.5 130 70.8
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 5.3e-53 211.5 133 72.2
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 6.9e-53 211.1 133 69.2
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 9.0e-53 210.7 175 59.4
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.2e-52 210.3 135 71.9
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 2.0e-52 209.5 133 71.4
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 2.6e-52 209.1 133 69.2
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 5.8e-52 208.0 133 72.2
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 7.6e-52 207.6 133 69.9
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 1.3e-51 206.8 137 73.0
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.7e-51 206.5 129 70.5
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 2.9e-51 205.7 130 71.5
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 4.9e-51 204.9 172 60.5
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 8.4e-51 204.1 130 70.8
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 8.4e-51 204.1 133 67.7
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 1.1e-50 203.8 132 73.5
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.4e-50 203.4 129 69.0
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 1.4e-50 203.4 172 59.3
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 4.2e-50 201.8 130 68.5
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 5.4e-50 201.4 129 68.2
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.7e-49 199.1 130 66.2
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 2.7e-49 199.1 133 68.4
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 1.5e-47 193.4 131 65.6
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 2.8e-46 189.1 110 76.4
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 5.3e-45 184.9 129 62.0
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.2e-44 183.7 129 63.6
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 1.2e-44 183.7 130 63.1
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 2.9e-43 179.1 129 60.5
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 5.5e-42 174.9 131 59.5
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 9.3e-42 174.1 131 58.0
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 9.3e-42 174.1 131 58.0
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.2e-41 173.7 131 60.3
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 1.2e-41 173.7 131 58.8
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 1.2e-41 173.7 131 58.8
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 1.2e-41 173.7 131 58.8
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 2.1e-41 172.9 131 59.5
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 3.5e-41 172.2 131 59.5
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 6.0e-41 171.4 130 59.2
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 1.0e-40 170.6 227 40.5
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.3e-40 170.2 131 59.5
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 6.7e-40 167.9 127 61.4
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 8.7e-40 167.5 131 58.0
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 1.9e-39 166.4 133 57.9
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 1.9e-39 166.4 133 59.4
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.6e-38 163.3 133 57.9
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 2.1e-38 162.9 131 55.7
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 2.8e-38 162.5 136 54.4
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 1.4e-37 160.2 156 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 6.9e-37 157.9 125 58.4
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 4.5e-36 155.2 85 81.2
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 2.9e-35 152.5 131 55.0
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 5.5e-34 148.3 85 80.0
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 2.3e-32 142.9 83 75.9
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 2.3e-32 142.9 125 54.4
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.5e-31 139.4 102 57.8
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 2.5e-31 139.4 126 50.0
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 4.2e-26 122.1 76 73.7
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 3.0e-24 115.9 117 52.1
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.1e-23 114.0 67 74.6
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 7.2e-18 94.7 122 41.8
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.1e-17 93.2 72 62.5
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 4.7e-17 92.0 55 65.5
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 2.5e-10 69.7 48 62.5
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.2e-10 68.9 48 60.4
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.1e-09 66.6 52 55.8
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 8.0e-09 64.7 46 60.9
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.0e-08 64.3 43 62.8


User provided reference genes

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