Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g36032 Nelumbo nucifera HOM05D005886 ORTHO05D007512 9.5e-86 320.1 155 100.0
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 1.6e-32 143.3 76 88.2
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 8.1e-29 131.0 76 78.9
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 9.0e-28 127.5 75 74.7
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 4.9e-26 121.7 77 72.7
Peaxi162Scf00120g00720 Petunia axillaris HOM05D005886 ORTHO05D007512 1.4e-25 120.2 77 72.7
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 1.9e-25 119.8 77 71.4
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.9e-25 119.8 77 72.7
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 1.9e-25 119.8 77 71.4
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 3.2e-25 119.0 77 71.4
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 5.5e-25 118.2 77 72.7
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 9.3e-25 117.5 78 71.8
Oeu025604.1 Olea europaea HOM05D005886 ORTHO05D007512 1.6e-24 116.7 76 73.7
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 2.1e-24 116.3 77 68.8
Nitab4.5_0001781g0100 Nicotiana tabacum HOM05D005886 ORTHO05D007512 2.1e-24 116.3 77 70.1
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 2.1e-24 116.3 76 72.4
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 2.1e-24 116.3 77 72.7
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 3.5e-24 115.5 77 68.8
CAN.G143.55 Capsicum annuum HOM05D005886 ORTHO05D007512 1.0e-23 114.0 77 70.1
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 1.8e-23 113.2 76 72.4
CSS0035441 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 2.3e-23 112.8 76 69.7
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 3.0e-23 112.5 77 68.8
vmacro07275 Vaccinium macrocarpon HOM05D005886 ORTHO05D007512 3.9e-23 112.1 78 69.2
Lj3A921T39 Lonicera japonica HOM05D005886 ORTHO05D007512 5.1e-23 111.7 75 65.3
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 5.1e-23 111.7 75 65.3
Dinv04428 Davidia involucrata HOM05D005886 ORTHO05D007512 6.7e-23 111.3 77 71.4
CSS0009115 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.1e-22 110.5 76 68.4
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 1.5e-22 110.2 77 67.5
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 2.5e-22 109.4 77 67.5
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 5.7e-22 108.2 78 62.8
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 5.7e-22 108.2 77 70.1
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 5.7e-22 108.2 77 70.1
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 7.4e-22 107.8 79 65.8
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 7.4e-22 107.8 99 60.6
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 7.4e-22 107.8 76 69.7
Gohir.A03G069600 Gossypium hirsutum HOM05D005886 ORTHO05D007512 9.6e-22 107.5 77 68.8
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 1.6e-21 106.7 75 66.7
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 2.1e-21 106.3 78 62.8
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 3.7e-21 105.5 77 61.0
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 8.2e-21 104.4 77 61.0
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 1.1e-20 104.0 75 64.0
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 1.4e-20 103.6 77 59.7
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 1.4e-20 103.6 76 67.1
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 2.4e-20 102.8 83 62.7
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 2.4e-20 102.8 78 64.1
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 2.4e-20 102.8 78 64.1
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 3.1e-20 102.4 77 58.4
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 4.0e-20 102.1 81 64.2
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 6.9e-20 101.3 76 61.8
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 6.9e-20 101.3 77 59.7
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 6.9e-20 101.3 75 65.3
CARHR240580 Cardamine hirsuta HOM05D005886 ORTHO05D007512 6.9e-20 101.3 75 65.3
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 9.0e-20 100.9 75 65.3
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 9.0e-20 100.9 75 65.3
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 2.0e-19 99.8 75 64.0
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 2.0e-19 99.8 75 64.0
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 2.6e-19 99.4 75 64.0
BcaB05g22897 Brassica carinata HOM05D005886 ORTHO05D007512 2.6e-19 99.4 75 64.0
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 2.6e-19 99.4 100 52.0
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 5.8e-19 98.2 75 62.7
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 7.6e-19 97.8 80 58.8
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 1.3e-18 97.1 75 62.7
Sabra10G0191000 Salix brachista HOM05D005886 ORTHO05D007512 1.3e-18 97.1 100 51.0
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 2.9e-18 95.9 81 58.0
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 5.0e-18 95.1 75 62.7
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 8.4e-18 94.4 82 57.3
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 8.4e-18 94.4 75 61.3
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 1.1e-17 94.0 77 61.0
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 1.1e-17 94.0 78 61.5
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 1.4e-17 93.6 76 59.2
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 9.3e-17 90.9 78 61.5
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 1.2e-16 90.5 76 55.3
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 1.6e-16 90.1 65 61.5
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 2.7e-16 89.4 78 57.7
Ca_06327_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 3.5e-16 89.0 76 53.9
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 3.5e-16 89.0 76 53.9
Sabra08G0009500 Salix brachista HOM05D005886 ORTHO05D007512 3.5e-16 89.0 77 57.1
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 4.6e-16 88.6 78 56.4
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 4.6e-16 88.6 77 55.8
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 7.9e-16 87.8 75 56.0
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 1.8e-15 86.7 78 55.1
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 1.8e-15 86.7 80 56.2
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 1.8e-15 86.7 80 56.2
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 3.9e-15 85.5 76 55.3
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 6.7e-15 84.7 77 54.5
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 6.7e-15 84.7 65 56.9
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 1.1e-14 84.0 64 59.4
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 1.1e-14 84.0 64 59.4
SHI21255 Sapria himalayana HOM05D005886 ORTHO05D007512 2.5e-14 82.8 78 59.0
unitig_46.g18648 Utricularia gibba HOM05D005886 ORTHO05D007512 2.5e-14 82.8 73 54.8
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 3.3e-14 82.4 63 58.7
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 4.3e-14 82.0 76 52.6
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 4.3e-14 82.0 64 53.1
C03p87240 Brassica napus HOM05D005886 ORTHO05D007512 5.7e-14 81.6 67 56.7
BolC3t21025H Brassica oleracea HOM05D005886 ORTHO05D007512 5.7e-14 81.6 67 56.7
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 5.7e-14 81.6 76 51.3
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 9.7e-14 80.9 75 56.0
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 1.3e-13 80.5 75 56.0
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.3e-13 80.5 75 56.0
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 1.6e-13 80.1 65 53.8
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 2.2e-13 79.7 80 55.0
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 2.2e-13 79.7 80 55.0
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 2.2e-13 79.7 64 56.2
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 6.3e-13 78.2 75 54.7
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 6.3e-13 78.2 75 54.7
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 1.1e-12 77.4 83 50.6
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 1.2e-11 73.9 60 58.3
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 1.2e-11 73.9 60 58.3
arahy.Tifrunner.gnm1.ann1.V9EI6C Arachis hypogaea HOM05D005886 ORTHO05D007512 1.2e-11 73.9 60 58.3
arahy.Tifrunner.gnm1.ann1.WENH69 Arachis hypogaea HOM05D005886 ORTHO05D007512 1.2e-11 73.9 60 58.3
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.0e-11 73.2 79 50.6
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 7.7e-11 71.2 78 50.0
Os01g0771100 Oryza sativa ssp. japonica HOM05D005886 ORTHO05D007512 1.3e-10 70.5 90 44.4
Psat6g052440 Pisum sativum HOM05D005886 ORTHO05D007512 2.7e-08 62.8 61 50.8
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 3.6e-08 62.4 86 36.0
Zm00001eb151940 Zea mays HOM05D005886 ORTHO05D007512 1.4e-07 60.5 66 48.5
SEGI_05706 Sequoiadendron giganteum HOM05D005886 ORTHO05D007512 9.7e-06 54.3 66 40.9


User provided reference genes

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