Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.0e-79 300.1 153 100.0
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.7e-15 86.7 85 61.2
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.7e-15 86.7 85 61.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.0e-15 85.9 82 67.1
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 6.6e-15 84.7 79 64.6
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.1e-14 84.0 86 61.6
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.9e-14 83.2 88 58.0
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.9e-14 83.2 74 68.9
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 3.3e-14 82.4 82 64.6
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 4.3e-14 82.0 81 59.3
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.6e-14 81.6 74 67.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 7.3e-14 81.3 89 56.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.2e-13 80.5 79 62.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.1e-13 79.7 91 59.3
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.8e-13 79.3 87 63.2
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.6e-13 79.0 80 65.0
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 6.2e-13 78.2 75 60.0
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 6.2e-13 78.2 73 61.6
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-12 77.0 84 58.3
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-12 77.0 79 62.0
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-12 77.0 79 62.0
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.8e-12 76.6 80 60.0
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.3e-12 76.3 63 61.9
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.9e-12 74.3 83 56.6
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.9e-12 74.3 86 57.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.5e-11 73.6 83 59.0
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.0e-11 73.2 82 57.3
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.6e-11 72.8 84 56.0
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 3.4e-11 72.4 63 71.4
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.4e-11 72.4 83 61.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.4e-11 72.4 86 57.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.4e-11 72.0 113 49.6
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 4.4e-11 72.0 71 57.7
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 4.4e-11 72.0 61 68.9
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 5.8e-11 71.6 61 67.2
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.6e-11 71.2 93 53.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.6e-11 71.2 87 55.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 7.6e-11 71.2 86 55.8
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.9e-11 70.9 78 62.8
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 9.9e-11 70.9 82 59.8
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.9e-11 70.9 73 60.3
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 9.9e-11 70.9 85 54.1
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.3e-10 70.5 79 62.0
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.7e-10 70.1 80 56.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.7e-10 70.1 71 60.6
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.2e-10 69.7 76 60.5
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.9e-10 69.3 65 67.7
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.9e-10 69.3 82 58.5
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.9e-10 69.3 75 57.3
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.8e-10 68.9 78 61.5
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.8e-10 68.9 74 59.5
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.8e-10 68.9 83 55.4
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 3.8e-10 68.9 66 62.1
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.8e-10 68.9 69 65.2
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.9e-10 68.6 74 62.2
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 4.9e-10 68.6 73 57.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.9e-10 68.6 66 63.6
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 4.9e-10 68.6 80 57.5
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 6.4e-10 68.2 74 52.7
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 6.4e-10 68.2 85 54.1
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 6.4e-10 68.2 83 57.8
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 8.4e-10 67.8 74 62.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.4e-10 67.8 69 59.4
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 8.4e-10 67.8 68 61.8
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 8.4e-10 67.8 76 56.6
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-09 67.4 69 60.9
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.4e-09 67.0 64 57.8
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.4e-09 67.0 74 60.8
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-09 67.0 81 49.4
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.9e-09 66.6 76 53.9
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.9e-09 66.6 78 57.7
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.9e-09 66.6 110 46.4
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-09 66.6 58 65.5
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.9e-09 66.6 75 58.7
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.9e-09 66.6 74 58.1
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 3.2e-09 65.9 86 55.8
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 3.2e-09 65.9 67 64.2
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.1e-09 65.5 73 58.9
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 5.4e-09 65.1 75 57.3
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 5.4e-09 65.1 75 57.3
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 5.4e-09 65.1 75 57.3
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 5.4e-09 65.1 75 57.3
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 5.4e-09 65.1 75 57.3
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 7.1e-09 64.7 80 56.2
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 7.1e-09 64.7 64 60.9
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 9.2e-09 64.3 61 63.9
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 9.2e-09 64.3 79 51.9
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 9.2e-09 64.3 76 55.3
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 9.2e-09 64.3 65 60.0
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 9.2e-09 64.3 68 54.4
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 9.2e-09 64.3 68 61.8
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.2e-08 63.9 77 53.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.2e-08 63.9 77 50.6
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.6e-08 63.5 80 55.0
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.6e-08 63.5 85 49.4
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 2.1e-08 63.2 64 60.9
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 2.1e-08 63.2 72 52.8
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.1e-08 63.2 81 45.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.1e-08 63.2 75 57.3
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.5e-08 62.4 88 52.3
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.5e-08 62.4 85 50.6
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.5e-08 62.4 89 46.1
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.5e-08 62.4 74 55.4
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 3.5e-08 62.4 71 57.7
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 3.5e-08 62.4 83 53.0
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.6e-08 62.0 74 54.1
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 6.0e-08 61.6 95 44.2
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 6.0e-08 61.6 59 61.0
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 6.0e-08 61.6 78 52.6
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 7.8e-08 61.2 69 53.6
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.8e-08 61.2 71 53.5
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.8e-08 61.2 75 50.7
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 7.8e-08 61.2 75 50.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 7.8e-08 61.2 76 60.5
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.0e-07 60.8 80 56.2
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.0e-07 60.8 64 57.8
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.0e-07 60.8 64 57.8
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.0e-07 60.8 73 54.8
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.0e-07 60.8 76 51.3
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.3e-07 60.5 60 56.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.7e-07 60.1 79 54.4
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-07 60.1 71 53.5
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 2.3e-07 59.7 74 55.4
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.0e-07 59.3 69 58.0
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.0e-07 59.3 90 47.8
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 3.9e-07 58.9 87 54.0
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.9e-07 58.9 85 49.4
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 6.6e-07 58.2 83 55.4
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 8.6e-07 57.8 80 53.8
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 8.6e-07 57.8 80 53.8
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 8.6e-07 57.8 76 57.9
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 8.6e-07 57.8 82 47.6
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.1e-06 57.4 77 55.8
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.1e-06 57.4 76 50.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.5e-06 57.0 62 61.3
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.5e-06 57.0 71 53.5
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.5e-06 56.2 66 50.0
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.3e-06 55.5 57 59.6
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 5.6e-06 55.1 59 61.0
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 5.6e-06 55.1 79 43.0
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 5.6e-06 55.1 79 45.6
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 7.3e-06 54.7 75 49.3
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 7.3e-06 54.7 79 49.4


User provided reference genes

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