Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 2.0e-104 382.5 197 100.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 4.1e-86 321.6 202 82.2
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 9.5e-83 310.5 201 82.6
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.5e-80 303.1 201 78.1
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.0e-80 302.8 197 81.7
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.7e-79 299.7 201 77.6
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 8.3e-79 297.4 203 78.8
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.1e-78 295.0 200 77.0
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 2.1e-77 292.7 201 76.6
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 2.1e-77 292.7 201 76.6
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.7e-77 292.4 201 75.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 7.8e-77 290.8 201 76.1
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 7.8e-77 290.8 203 80.8
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.7e-76 289.7 205 74.6
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.7e-76 289.7 202 75.2
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.3e-76 289.3 202 76.7
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.9e-76 288.5 203 79.8
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.9e-76 288.5 200 76.5
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 6.6e-76 287.7 203 76.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.1e-75 287.0 204 74.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.9e-75 286.2 219 71.2
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.5e-75 285.8 198 76.3
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 4.3e-75 285.0 204 74.0
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.3e-75 285.0 200 74.5
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 4.3e-75 285.0 209 76.1
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 5.6e-75 284.6 202 75.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 7.3e-75 284.3 203 75.4
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 7.3e-75 284.3 200 74.5
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 7.3e-75 284.3 202 76.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.2e-74 283.5 194 75.3
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.1e-74 282.7 202 74.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 3.6e-74 282.0 200 75.0
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.6e-74 282.0 203 75.4
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 3.6e-74 282.0 201 74.1
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 4.7e-74 281.6 202 74.3
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 4.7e-74 281.6 200 74.0
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 4.7e-74 281.6 201 73.6
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 8.1e-74 280.8 201 72.6
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.1e-73 278.9 201 74.1
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.1e-73 278.9 199 74.9
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.2e-73 278.1 187 76.5
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 8.9e-73 277.3 207 72.5
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.5e-72 276.6 204 72.5
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.0e-72 276.2 178 80.9
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.0e-72 276.2 178 80.9
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.4e-72 275.4 197 74.1
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 5.8e-72 274.6 200 72.5
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 5.8e-72 274.6 197 75.1
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 7.6e-72 274.2 148 91.9
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 7.6e-72 274.2 200 72.5
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.7e-71 273.1 201 73.1
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 2.9e-71 272.3 201 72.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 4.9e-71 271.6 204 71.1
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 8.4e-71 270.8 203 70.9
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.1e-70 270.4 204 73.5
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.4e-70 270.0 206 71.4
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 2.4e-70 269.2 195 75.9
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.4e-70 269.2 201 70.6
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 9.3e-70 267.3 148 89.9
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.2e-69 266.9 176 77.3
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-69 266.5 235 63.8
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.7e-69 265.8 201 72.1
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.7e-69 265.8 177 78.0
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 3.5e-69 265.4 145 88.3
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 6.0e-69 264.6 170 78.2
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.0e-68 263.8 148 85.8
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.9e-68 261.9 206 69.4
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.5e-67 260.0 247 59.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.9e-67 259.6 160 79.4
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.5e-67 259.2 188 70.7
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 5.6e-67 258.1 148 83.1
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 7.3e-67 257.7 206 69.4
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-66 256.5 148 83.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 2.1e-66 256.1 169 77.5
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 4.8e-66 255.0 149 85.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 6.2e-66 254.6 199 69.8
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 6.2e-66 254.6 148 85.8
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 8.1e-66 254.2 207 66.7
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 8.1e-66 254.2 149 85.2
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 8.1e-66 254.2 211 66.8
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.1e-65 253.8 241 62.7
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-65 253.8 148 83.1
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.1e-65 253.8 146 81.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.8e-65 253.1 148 82.4
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 3.1e-65 252.3 151 82.1
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.2e-64 250.4 150 82.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 7.6e-64 247.7 211 64.0
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 7.6e-64 247.7 205 65.4
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 9.9e-64 247.3 163 76.1
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-63 246.9 166 76.5
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-63 246.9 166 76.5
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.2e-63 246.1 202 68.3
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.8e-63 245.4 148 79.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 3.8e-63 245.4 148 78.4
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.9e-63 245.0 207 64.7
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 6.4e-63 244.6 198 71.2
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 8.4e-63 244.2 210 64.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-62 243.8 199 70.9
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-62 243.4 198 70.7
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 3.2e-62 242.3 178 69.7
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.2e-62 242.3 186 69.4
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 3.2e-62 242.3 174 72.4
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.2e-62 242.3 148 83.8
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 5.4e-62 241.5 201 65.2
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 9.3e-62 240.7 199 69.8
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-61 240.4 208 64.9
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.2e-61 240.4 146 79.5
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.2e-61 240.4 141 85.1
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.6e-61 240.0 152 76.3
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.1e-61 239.6 185 67.6
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 3.5e-61 238.8 152 77.0
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 4.6e-61 238.4 199 66.3
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 6.0e-61 238.0 148 80.4
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.0e-60 237.3 159 74.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.3e-60 236.9 208 63.9
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.1e-59 233.8 148 79.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-59 232.6 215 65.6
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-59 232.6 215 65.6
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.3e-59 231.9 200 65.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.6e-58 229.9 166 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.2e-58 228.0 150 72.7
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 8.1e-58 227.6 195 62.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 9.0e-57 224.2 163 70.6
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 9.0e-57 224.2 215 63.7
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.0e-56 223.0 160 70.0
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 7.6e-56 221.1 123 89.4
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.2e-55 219.5 148 73.6
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.1e-54 217.2 153 73.9
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.4e-54 216.9 175 65.7
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.9e-54 216.5 215 56.7
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.2e-54 215.3 155 69.0
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.1e-54 214.5 173 65.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.2e-53 213.8 170 66.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.6e-53 213.4 190 64.2
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 8.7e-52 207.6 225 56.4
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.3e-51 205.7 157 70.1
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 7.4e-51 204.5 192 56.2
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.4e-49 200.3 158 68.4
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 6.9e-49 198.0 123 79.7
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 2.0e-48 196.4 149 71.8
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.9e-47 192.6 152 62.5
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 6.5e-47 191.4 179 58.7
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 6.5e-47 191.4 149 62.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 9.3e-46 187.6 140 70.0
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-45 185.7 109 84.4
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.3e-44 183.0 106 84.0
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 2.3e-44 183.0 159 63.5
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 6.2e-42 174.9 113 78.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 5.0e-39 165.2 92 87.0
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 3.9e-36 155.6 90 84.4
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.2e-34 149.8 134 61.9
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.8e-33 146.7 82 84.1
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 7.2e-30 134.8 132 58.3
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 9.4e-30 134.4 150 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 4.5e-24 115.5 96 59.4
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 5.5e-22 108.6 80 71.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 6.1e-21 105.1 140 38.6
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 7.4e-19 98.2 182 34.6
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.9e-14 83.6 77 58.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.3e-11 72.8 49 71.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 6.3e-10 68.6 103 43.7
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 8.2e-10 68.2 158 29.7
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.7e-07 60.5 33 81.8
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 2.5e-06 56.6 39 84.6


User provided reference genes

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