Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.7e-168 595.9 293 100.0
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.2e-84 317.4 278 61.2
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.2e-78 295.0 279 57.0
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.9e-67 258.8 277 54.5
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 5.1e-64 248.8 279 53.8
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 8.9e-61 238.0 304 48.0
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 1.3e-56 224.2 275 51.3
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 6.6e-56 221.9 274 50.4
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.1e-53 214.5 292 49.3
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.8e-53 213.8 293 46.8
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 3.4e-52 209.5 296 45.6
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 3.4e-52 209.5 296 45.6
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.8e-52 208.8 291 45.7
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.3e-51 207.6 276 47.1
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.7e-51 207.2 291 46.7
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.7e-51 207.2 297 44.8
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 4.9e-51 205.7 290 46.6
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 6.0e-49 198.7 270 45.9
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.3e-48 196.8 282 45.7
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 3.0e-48 196.4 272 45.6
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 8.7e-48 194.9 276 45.7
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 5.6e-47 192.2 273 45.4
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.8e-46 189.9 277 44.8
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 4.8e-46 189.1 295 46.8
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 6.2e-46 188.7 285 42.5
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 5.3e-45 185.7 287 44.3
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 3.4e-44 183.0 279 42.7
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 7.6e-44 181.8 287 43.9
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 7.6e-44 181.8 292 43.5
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.7e-43 180.6 276 43.1
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 2.2e-43 180.3 278 43.9
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 2.9e-43 179.9 289 43.3
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 8.4e-43 178.3 272 43.4
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.2e-42 176.4 283 42.0
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.0e-40 171.4 282 39.0
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 8.7e-40 168.3 275 42.5
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.9e-39 167.2 296 39.5
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.5e-39 166.8 275 42.2
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 4.3e-39 166.0 285 40.4
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 9.6e-39 164.9 202 49.0
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 8.1e-38 161.8 274 41.2
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.8e-37 160.6 276 41.3
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.0e-36 157.1 275 41.1
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 4.5e-36 156.0 242 45.5
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.0e-35 154.8 276 39.9
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.3e-35 154.5 271 39.1
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 1.3e-35 154.5 292 40.4
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 8.4e-35 151.8 272 40.8
TAR633G2325 Trochodendron aralioides HOM05D003715 ORTHO05D003958 8.4e-35 151.8 163 54.6
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.1e-34 151.4 277 40.1
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.1e-34 151.4 293 34.8
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.4e-34 151.0 275 38.5
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.4e-34 151.0 272 39.0
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 4.2e-34 149.4 290 39.3
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 5.5e-34 149.1 289 39.4
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 5.5e-34 149.1 274 40.5
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 7.1e-34 148.7 285 39.3
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.2e-33 147.9 279 44.1
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 2.7e-33 146.7 275 39.6
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 3.5e-33 146.4 289 37.7
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 7.9e-33 145.2 279 39.8
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 2.3e-32 143.7 292 38.7
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.3e-32 143.7 284 38.4
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.5e-31 141.0 269 38.3
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.3e-30 137.9 270 37.4
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 2.1e-30 137.1 275 38.2
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 2.8e-30 136.7 270 39.3
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 6.2e-30 135.6 270 38.1
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.8e-29 134.0 273 36.6
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.8e-29 134.0 270 39.6
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.8e-29 134.0 282 38.7
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.8e-29 134.0 270 37.8
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 3.1e-29 133.3 282 36.2
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 4.0e-29 132.9 278 36.7
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 9.0e-29 131.7 286 35.3
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 2.0e-28 130.6 270 35.6
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.6e-28 130.2 272 34.9
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 3.4e-28 129.8 270 36.3
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.4e-28 129.8 273 37.4
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.3e-27 127.9 270 34.8
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.2e-27 127.1 264 35.6
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 3.8e-27 126.3 151 49.0
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 8.4e-27 125.2 296 37.2
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 5.5e-26 122.5 278 36.0
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 5.5e-26 122.5 269 34.9
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 9.3e-26 121.7 267 37.1
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 1.2e-25 121.3 274 35.8
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.6e-25 120.9 286 34.6
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.6e-25 120.9 273 34.4
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 2.7e-25 120.2 270 35.9
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 4.6e-25 119.4 268 34.3
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.8e-24 117.5 272 32.7
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 1.8e-24 117.5 271 36.9
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.3e-24 117.1 275 36.7
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 3.9e-24 116.3 264 36.4
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 6.7e-24 115.5 146 48.6
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 8.7e-24 115.2 271 35.8
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.5e-23 114.4 287 34.1
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.9e-23 114.0 289 33.9
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 5.7e-23 112.5 270 33.0
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 9.7e-23 111.7 272 33.8
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 2.2e-22 110.5 244 37.7
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 2.2e-22 110.5 272 33.1
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.8e-22 110.2 269 37.2
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 6.3e-22 109.0 292 35.3
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-21 107.8 271 37.3
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 3.1e-21 106.7 285 33.0
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.1e-21 106.7 292 35.3
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 4.1e-21 106.3 271 33.6
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.0e-20 104.0 280 30.7
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 5.9e-20 102.4 289 32.2
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 7.7e-20 102.1 210 36.2
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.7e-20 102.1 292 34.6
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.2e-19 100.5 288 35.1
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.2e-19 100.5 245 33.9
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.2e-19 100.5 249 35.3
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 1.1e-18 98.2 249 34.5
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.4e-18 97.8 186 38.2
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.9e-18 97.4 293 31.1
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 4.2e-18 96.3 292 34.6
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.1e-17 94.0 241 35.3
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 2.7e-17 93.6 269 27.9
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 4.6e-17 92.8 241 34.4
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 6.1e-17 92.4 301 34.2
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 2.3e-16 90.5 295 29.2
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.0e-16 90.1 169 37.3
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.9e-16 89.7 295 30.2
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 8.8e-16 88.6 293 30.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 8.8e-16 88.6 293 28.3
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.5e-15 87.8 284 30.6
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.5e-15 87.8 310 29.7
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.5e-15 87.0 294 30.3
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 2.5e-15 87.0 296 29.4
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.5e-15 87.0 146 39.7
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.5e-15 87.0 293 31.1
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 3.3e-15 86.7 290 29.7
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 4.3e-15 86.3 239 31.4
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 4.3e-15 86.3 296 29.4
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 4.3e-15 86.3 296 29.4
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 4.3e-15 86.3 296 29.4
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 4.3e-15 86.3 271 30.6
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 7.4e-15 85.5 290 30.0
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 9.7e-15 85.1 296 28.7
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 9.7e-15 85.1 275 30.9
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.7e-14 84.3 297 28.6
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.2e-14 84.0 299 27.4
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 2.2e-14 84.0 297 28.6
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 2.2e-14 84.0 294 29.3
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 3.7e-14 83.2 295 29.8
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 3.7e-14 83.2 284 29.6
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 3.7e-14 83.2 161 39.1
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 4.8e-14 82.8 302 30.5
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 8.2e-14 82.0 295 28.5
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 8.2e-14 82.0 279 29.0
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.1e-13 81.6 281 28.8
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 4.1e-13 79.7 284 28.2
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 4.1e-13 79.7 297 27.6
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.1e-13 79.7 145 37.9
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.1e-13 79.7 280 30.4
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 5.3e-13 79.3 286 29.7
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 6.9e-13 79.0 298 29.2
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.5e-12 77.8 165 35.2
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.0e-12 77.4 292 30.1
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.4e-12 76.6 217 30.9
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 5.9e-12 75.9 293 28.0
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 5.9e-12 75.9 293 28.0
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.1e-10 71.6 133 34.6
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-10 71.6 297 28.3
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.1e-10 71.6 236 26.7
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 7.2e-10 68.9 304 26.0
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 4.7e-09 66.2 54 57.4
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.2e-06 57.4 271 27.7
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-06 57.4 161 32.3
CDE02G1486 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 2.2e-06 57.4 145 33.8
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 2.8e-06 57.0 76 40.8
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.8e-06 57.0 164 29.9


User provided reference genes

Program Settings