Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.0e-154 550.1 279 100.0
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.9e-93 345.9 246 75.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 4.8e-88 328.6 241 73.4
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.2e-83 313.9 236 70.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.1e-83 313.2 233 73.0
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 6.1e-83 311.6 249 66.7
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 8.7e-82 307.8 246 66.3
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 3.7e-80 302.4 245 66.9
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 4.8e-80 302.0 248 62.9
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 4.8e-80 302.0 248 62.9
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 9.1e-79 297.7 246 61.8
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.0e-78 296.6 247 61.9
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.4e-78 295.8 243 63.4
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.4e-78 295.8 243 63.4
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 4.5e-78 295.4 234 67.5
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 5.9e-78 295.0 239 64.0
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 7.7e-78 294.7 237 65.4
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.9e-77 292.7 246 61.8
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 8.5e-77 291.2 239 64.9
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.4e-76 290.4 249 63.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.9e-76 290.0 240 64.2
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.9e-76 290.0 244 64.8
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.2e-76 289.3 239 62.8
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.2e-76 288.9 243 61.7
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.5e-76 288.5 244 64.3
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 7.2e-76 288.1 248 61.3
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 7.2e-76 288.1 246 61.4
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-75 287.3 249 59.8
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.2e-75 287.3 249 60.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.1e-75 286.6 239 62.3
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.7e-75 286.2 233 64.4
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.6e-75 285.8 239 63.2
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 6.1e-75 285.0 241 65.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.8e-74 283.5 244 62.3
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.8e-74 283.5 246 65.4
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.8e-74 283.5 238 66.0
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.3e-74 283.1 236 63.6
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 2.3e-74 283.1 235 63.0
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 3.0e-74 282.7 243 60.9
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.5e-73 280.4 246 62.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.0e-73 280.0 249 60.6
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.6e-73 279.6 237 64.1
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 3.3e-73 279.3 242 63.2
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.3e-73 279.3 249 61.0
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.4e-73 278.9 236 62.3
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 4.4e-73 278.9 246 60.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 4.4e-73 278.9 230 67.0
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.3e-72 277.3 249 60.6
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.3e-72 277.3 202 69.3
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.7e-72 276.9 199 71.9
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.7e-72 276.9 237 62.9
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.7e-72 276.9 222 66.2
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 2.2e-72 276.6 242 62.8
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.2e-72 276.6 245 60.0
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.7e-72 275.8 251 59.0
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.7e-72 275.8 251 59.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 3.7e-72 275.8 240 62.5
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.7e-72 275.8 236 65.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.1e-71 274.2 249 59.8
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.8e-71 273.5 239 61.1
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.8e-71 273.5 244 63.9
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 4.1e-71 272.3 238 63.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.3e-71 271.9 235 63.0
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 6.9e-71 271.6 198 70.7
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 9.1e-71 271.2 243 60.5
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.5e-70 270.4 271 56.8
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.0e-70 270.0 245 58.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.6e-70 269.6 227 66.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.9e-69 266.2 231 61.9
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.9e-69 266.2 246 59.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 8.5e-69 264.6 246 59.8
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.4e-68 263.8 245 62.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.4e-68 263.8 208 66.3
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 4.2e-68 262.3 210 65.2
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.2e-68 262.3 247 58.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.2e-68 262.3 236 60.6
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 9.4e-68 261.2 208 64.4
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.2e-67 260.8 190 70.0
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.6e-67 259.2 197 66.0
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 4.7e-67 258.8 252 61.5
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 7.9e-67 258.1 247 57.9
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 7.9e-67 258.1 247 57.9
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.0e-66 257.7 236 59.3
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.8e-66 256.9 227 61.2
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.0e-66 256.1 226 61.5
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 3.9e-66 255.8 242 57.9
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 6.7e-66 255.0 257 56.0
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.0e-65 253.4 199 66.3
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.3e-65 252.7 239 58.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 5.7e-65 251.9 247 55.1
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 5.7e-65 251.9 211 64.0
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 9.7e-65 251.1 186 70.4
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.7e-64 250.4 238 58.4
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 8.2e-64 248.1 249 59.4
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.1e-63 247.7 240 57.1
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.4e-63 247.3 237 59.5
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.8e-63 246.9 249 59.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 9.1e-63 244.6 217 59.9
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 9.1e-63 244.6 217 59.9
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 4.5e-62 242.3 201 64.2
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.9e-62 241.9 198 65.2
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.0e-61 241.1 245 55.1
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.5e-60 236.5 194 67.0
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 7.2e-60 235.0 194 66.5
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 7.2e-60 235.0 226 59.7
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.2e-60 235.0 240 56.2
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 4.7e-59 232.3 238 56.3
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.4e-58 230.7 235 56.2
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-58 230.7 194 66.0
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.0e-58 229.2 262 51.5
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 5.2e-58 228.8 262 50.4
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.5e-57 227.3 239 56.5
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.6e-57 226.5 200 61.0
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.7e-56 223.8 243 56.8
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.2e-56 223.4 248 52.8
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.2e-56 223.4 235 54.5
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.8e-56 222.2 257 54.1
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.8e-56 222.2 240 53.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.2e-56 221.5 258 51.6
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.4e-55 219.9 216 57.4
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 7.0e-55 218.4 218 53.7
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 7.0e-55 218.4 243 55.6
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 7.0e-55 218.4 217 53.9
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-54 217.2 273 49.1
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.6e-54 217.2 273 49.1
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.0e-54 216.9 198 57.6
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.0e-54 216.9 262 51.5
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.5e-54 216.1 172 64.5
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 2.2e-53 213.4 163 66.3
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.6e-49 199.9 258 46.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.4e-47 193.4 147 67.3
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.1e-44 184.5 201 52.2
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.8e-42 177.2 184 54.3
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.3e-42 176.8 168 57.1
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 4.0e-42 176.0 128 69.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.6e-41 173.3 200 49.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 5.4e-39 165.6 152 55.9
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.0e-39 165.2 187 50.3
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.7e-37 160.6 181 50.3
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 5.0e-37 159.1 211 44.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 5.6e-36 155.6 234 41.9
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.7e-35 152.5 207 45.4
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.2e-33 147.9 114 67.5
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 7.5e-33 145.2 97 77.3
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.9e-32 143.3 200 45.0
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.7e-32 142.9 99 75.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.8e-30 135.2 222 41.4
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 5.0e-29 132.5 118 56.8
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 8.6e-29 131.7 201 41.8
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.4e-25 119.4 98 61.2
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 8.6e-21 105.1 95 56.8
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.6e-14 84.3 111 46.8
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.9e-12 77.4 131 42.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 2.5e-12 77.0 90 42.2
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 5.6e-12 75.9 88 55.7
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.2e-11 74.7 88 55.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.2e-11 72.4 100 53.0
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 8.4e-08 62.0 68 55.9


User provided reference genes

Program Settings