Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.6e-185 652.5 310 100.0
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 2.1e-145 519.2 287 84.3
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 3.0e-139 498.8 285 82.8
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.1e-138 496.9 283 83.0
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.5e-138 496.5 283 82.7
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.9e-138 496.1 286 81.5
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 7.3e-138 494.2 282 83.3
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.2e-137 493.4 283 82.0
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 1.2e-137 493.4 283 82.3
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 3.6e-137 491.9 286 80.8
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 3.6e-137 491.9 298 77.9
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 6.2e-137 491.1 288 80.9
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.8e-136 489.6 286 80.1
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.8e-136 489.6 312 75.6
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 8.9e-136 487.3 294 78.9
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 5.8e-135 484.6 285 78.6
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 2.2e-134 482.6 285 78.2
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 2.2e-134 482.6 286 78.7
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.1e-133 480.3 288 79.9
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.4e-133 479.9 299 75.6
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 3.2e-133 478.8 277 80.5
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 3.2e-133 478.8 288 78.1
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 4.2e-133 478.4 296 75.7
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 5.4e-133 478.0 302 75.2
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 7.1e-133 477.6 290 77.9
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 1.2e-132 476.9 287 77.7
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.6e-132 476.5 285 77.5
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.6e-132 476.5 280 80.4
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 2.1e-132 476.1 294 77.6
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 7.8e-132 474.2 296 75.7
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 1.7e-131 473.0 281 79.4
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 2.3e-131 472.6 286 77.6
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.9e-131 471.9 286 78.0
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 5.1e-131 471.5 284 76.1
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.5e-130 469.2 287 76.0
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 2.5e-130 469.2 274 78.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 3.3e-130 468.8 296 75.0
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 5.6e-130 468.0 279 79.6
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 5.6e-130 468.0 275 78.9
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 7.3e-130 467.6 300 74.3
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.3e-129 466.8 288 76.0
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-129 466.5 278 78.4
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 2.1e-129 466.1 291 75.9
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 2.1e-129 466.1 295 74.9
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 2.1e-129 466.1 299 73.9
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 2.8e-129 465.7 287 76.7
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.8e-129 465.7 303 72.9
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 3.6e-129 465.3 279 77.4
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 4.8e-129 464.9 280 77.9
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 4.8e-129 464.9 279 79.6
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 6.2e-129 464.5 279 78.9
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 6.2e-129 464.5 279 78.9
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 6.2e-129 464.5 286 77.6
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 8.1e-129 464.2 286 76.6
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 8.1e-129 464.2 279 79.2
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.1e-128 463.8 280 78.9
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.4e-128 463.4 284 75.7
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 1.8e-128 463.0 288 75.7
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 2.4e-128 462.6 284 74.3
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 3.1e-128 462.2 312 71.5
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 5.3e-128 461.5 317 69.1
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 5.3e-128 461.5 297 73.7
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 5.3e-128 461.5 298 74.5
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 5.3e-128 461.5 260 81.9
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 6.9e-128 461.1 279 78.5
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.9e-128 461.1 281 76.5
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.2e-127 460.3 299 73.6
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 2.0e-127 459.5 296 72.0
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.0e-127 459.5 276 76.1
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 2.9e-126 455.7 298 74.5
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 8.4e-126 454.1 295 70.5
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.1e-125 453.8 302 72.2
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.9e-125 453.0 279 76.3
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 3.2e-125 452.2 280 75.4
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 3.2e-125 452.2 293 71.7
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 9.3e-125 450.7 304 71.4
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.6e-124 449.9 287 73.9
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 2.7e-124 449.1 299 69.2
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.0e-123 447.2 299 70.6
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 3.0e-123 445.7 275 74.5
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 2.5e-122 442.6 278 75.2
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 9.6e-122 440.7 306 69.9
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 1.6e-121 439.9 273 75.8
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.6e-121 439.9 393 58.0
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 2.1e-121 439.5 276 75.7
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 8.1e-121 437.6 288 70.8
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.3e-118 430.3 301 70.8
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 6.7e-115 417.9 287 69.7
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 1.3e-113 413.7 309 67.3
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 4.8e-113 411.8 296 69.9
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 6.2e-113 411.4 246 80.1
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 4.0e-112 408.7 297 67.7
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 4.0e-112 408.7 297 67.7
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.6e-111 406.0 250 76.8
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.4e-109 400.2 320 62.5
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 2.5e-109 399.4 275 68.7
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 8.7e-107 391.0 267 70.0
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 5.9e-103 378.3 212 85.4
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 5.0e-102 375.2 263 66.5
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 5.0e-102 375.2 246 72.0
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 3.9e-99 365.5 252 69.8
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 5.7e-98 361.7 211 81.0
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 4.1e-96 355.5 281 64.1
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 7.2e-93 344.7 243 71.6
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 6.1e-92 341.7 202 80.2
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.5e-90 337.0 202 78.7
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 7.4e-90 334.7 250 67.2
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 9.7e-74 281.2 286 53.1
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.0e-70 271.2 176 73.3
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 7.2e-69 265.0 271 48.7
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 8.0e-68 261.5 245 54.3
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 8.8e-67 258.1 264 53.8
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 7.8e-55 218.4 264 46.2
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 7.3e-53 211.8 154 66.2
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.6e-50 203.4 278 45.3
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.4e-48 197.6 127 71.7
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-47 194.1 136 67.6
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.7e-41 174.1 97 85.6
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 5.0e-38 162.5 162 56.8
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 9.5e-37 158.3 98 73.5
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 2.1e-31 140.6 81 76.5
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 8.6e-30 135.2 66 87.9
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 1.9e-29 134.0 103 64.1
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 2.4e-16 90.5 67 65.7
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 6.6e-14 82.4 56 71.4
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 4.5e-10 69.7 58 60.3
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 2.7e-07 60.5 33 75.8
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 7.9e-07 58.9 85 38.8
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 7.9e-07 58.9 85 38.8
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 7.9e-07 58.9 85 38.8
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.9e-06 56.6 39 71.8


User provided reference genes

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