Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn6g33393 Nelumbo nucifera HOM05D004665 ORTHO05D006264 8.9e-99 363.6 185 100.0
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 2.6e-26 122.9 178 46.1
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 4.5e-26 122.1 175 48.0
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 1.1e-24 117.5 175 46.3
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 4.2e-24 115.5 171 46.8
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 4.2e-24 115.5 171 46.8
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 9.4e-24 114.4 171 47.4
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 1.2e-23 114.0 171 46.8
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 1.0e-22 110.9 174 43.7
vmacro18403 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 1.4e-22 110.5 171 45.0
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 4.0e-22 109.0 174 43.7
Nn3g16211 Nelumbo nucifera HOM05D004665 ORTHO05D006264 4.0e-22 109.0 55 96.4
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 6.7e-22 108.2 174 43.7
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 1.5e-21 107.1 171 44.4
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 2.0e-21 106.7 173 44.5
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 4.4e-21 105.5 171 43.3
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 1.3e-20 104.0 169 45.0
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 1.3e-20 104.0 175 42.3
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 1.7e-20 103.6 172 43.6
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 2.8e-20 102.8 174 43.7
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 2.8e-20 102.8 172 42.4
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 3.7e-20 102.4 172 43.0
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 4.8e-20 102.1 173 43.4
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 4.8e-20 102.1 174 43.1
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 6.3e-20 101.7 173 42.2
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 6.3e-20 101.7 172 43.0
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 8.2e-20 101.3 172 42.4
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 1.8e-19 100.1 173 43.4
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 2.4e-19 99.8 171 43.3
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 2.4e-19 99.8 174 42.5
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 3.1e-19 99.4 171 40.9
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 3.1e-19 99.4 173 42.2
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 3.1e-19 99.4 174 42.0
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 3.1e-19 99.4 191 39.8
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 3.1e-19 99.4 174 42.0
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 4.1e-19 99.0 172 41.9
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 4.1e-19 99.0 173 41.0
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 4.1e-19 99.0 172 42.4
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 5.3e-19 98.6 179 40.2
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 5.3e-19 98.6 179 40.2
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 7.0e-19 98.2 174 42.0
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 7.0e-19 98.2 174 40.2
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 9.1e-19 97.8 173 41.0
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 9.1e-19 97.8 171 42.1
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 1.2e-18 97.4 173 40.5
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 1.2e-18 97.4 168 42.9
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 1.6e-18 97.1 174 42.0
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 1.6e-18 97.1 175 41.7
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 1.6e-18 97.1 174 42.0
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 3.5e-18 95.9 174 41.4
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 4.5e-18 95.5 173 41.0
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 4.5e-18 95.5 172 41.9
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 4.5e-18 95.5 172 42.4
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 5.9e-18 95.1 171 40.9
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 7.7e-18 94.7 172 37.8
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 7.7e-18 94.7 175 41.1
Atru.chr6.2724 Acer truncatum HOM05D004665 ORTHO05D006264 1.0e-17 94.4 175 41.1
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 1.0e-17 94.4 172 41.9
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.0e-17 94.4 172 41.9
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.0e-17 94.4 172 41.9
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 1.0e-17 94.4 176 40.9
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 2.2e-17 93.2 175 40.0
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 2.2e-17 93.2 175 40.0
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 2.9e-17 92.8 168 39.3
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 3.8e-17 92.4 170 37.6
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 3.8e-17 92.4 175 40.0
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 5.0e-17 92.0 172 40.1
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 6.5e-17 91.7 173 39.9
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 8.5e-17 91.3 170 39.4
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 8.5e-17 91.3 175 40.0
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 1.1e-16 90.9 172 39.5
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 1.1e-16 90.9 172 39.5
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 1.1e-16 90.9 172 40.1
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 1.1e-16 90.9 172 39.5
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 1.1e-16 90.9 172 39.5
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 1.9e-16 90.1 172 39.5
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 1.9e-16 90.1 170 38.8
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 1.9e-16 90.1 170 38.8
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 1.9e-16 90.1 174 39.7
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 2.5e-16 89.7 170 38.8
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 2.5e-16 89.7 170 38.8
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 3.2e-16 89.4 158 41.8
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 9.4e-16 87.8 171 38.0
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 1.2e-15 87.4 170 39.4
ATR0582G225 Amborella trichopoda HOM05D004665 ORTHO05D006264 2.1e-15 86.7 173 37.0
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 2.1e-15 86.7 172 38.4
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 2.1e-15 86.7 172 38.4
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 2.1e-15 86.7 172 38.4
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 2.1e-15 86.7 172 38.4
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 2.1e-15 86.7 172 38.4
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 2.7e-15 86.3 172 37.2
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 2.7e-15 86.3 179 39.1
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 3.6e-15 85.9 159 40.9
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 4.7e-15 85.5 175 37.7
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.7e-15 85.5 166 36.7
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 6.1e-15 85.1 176 37.5
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 8.0e-15 84.7 200 34.5
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 1.0e-14 84.3 174 37.4
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 1.8e-14 83.6 174 38.5
Aqoxy271s005 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 2.3e-14 83.2 120 46.7
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 3.0e-14 82.8 158 39.9
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 6.8e-14 81.6 170 37.6
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 4.4e-13 79.0 103 48.5
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 4.4e-13 79.0 172 36.0
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 5.7e-13 78.6 172 36.0
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 5.7e-13 78.6 172 36.0
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 9.8e-13 77.8 103 47.6
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 1.3e-12 77.4 116 44.8
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 2.2e-12 76.6 101 49.5
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 6.3e-12 75.1 174 34.5
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 2.4e-11 73.2 172 34.3
Peaxi162Scf00420g00913 Petunia axillaris HOM05D004665 ORTHO05D006264 5.4e-11 72.0 119 42.0
Actinidia37709 Actinidia chinensis HOM05D004665 ORTHO05D006264 2.7e-10 69.7 123 39.8
CAN.G1393.18 Capsicum annuum HOM05D004665 ORTHO05D006264 3.5e-10 69.3 151 36.4
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 4.5e-10 68.9 139 39.6
Haze_14979 Corylus avellana HOM05D004665 ORTHO05D006264 1.9e-08 63.5 35 82.9
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 2.5e-08 63.2 208 35.1
Cfa007634 Carpinus fangiana HOM05D004665 ORTHO05D006264 3.2e-08 62.8 34 85.3
PGSC0003DMG400025244 Solanum tuberosum HOM05D004665 ORTHO05D006264 3.2e-08 62.8 113 40.7
FAN02G3871 Fragaria x ananassa HOM05D004665 ORTHO05D006264 5.5e-08 62.0 45 73.3
SalBow4G0739 Salvia bowleyana HOM05D004665 ORTHO05D006264 1.2e-07 60.8 98 42.9
PGSC0003DMG401020232 Solanum tuberosum HOM05D004665 ORTHO05D006264 1.2e-07 60.8 93 44.1
Nitab4.5_0003951g0020 Nicotiana tabacum HOM05D004665 ORTHO05D006264 2.8e-07 59.7 108 41.7
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 3.6e-07 59.3 103 35.9
FAN02G3991 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.0e-06 57.8 99 40.4
Nn5g26746 Nelumbo nucifera HOM05D004665 ORTHO05D280140 1.4e-06 57.4 25 100.0
Sopen01g033730 Solanum pennellii HOM05D004665 ORTHO05D006264 1.4e-06 57.4 113 39.8
Solyc01g086730.4 Solanum lycopersicum HOM05D004665 ORTHO05D006264 2.3e-06 56.6 116 38.8
Atru.chr1.2008 Acer truncatum HOM05D004665 ORTHO05D006264 5.2e-06 55.5 120 36.7


User provided reference genes

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