Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 7.2e-65 250.4 121 100.0
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 2.9e-29 132.1 70 90.0
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 2.7e-27 125.6 67 88.1
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 1.3e-26 123.2 66 84.8
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 1.7e-26 122.9 69 84.1
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 5.0e-26 121.3 109 57.8
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 6.6e-26 120.9 69 81.2
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 8.6e-26 120.6 69 82.6
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 8.6e-26 120.6 69 82.6
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.5e-25 119.8 72 73.6
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 1.9e-25 119.4 69 79.7
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.9e-25 119.4 69 81.2
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 2.5e-25 119.0 67 82.1
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 2.5e-25 119.0 69 81.2
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 3.3e-25 118.6 69 75.4
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.3e-25 118.6 69 76.8
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 4.3e-25 118.2 69 79.7
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 4.3e-25 118.2 69 82.6
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 4.3e-25 118.2 69 76.8
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 5.6e-25 117.9 69 79.7
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 5.6e-25 117.9 69 79.7
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 9.5e-25 117.1 69 81.2
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 1.2e-24 116.7 69 75.4
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 1.2e-24 116.7 69 75.4
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 1.6e-24 116.3 69 81.2
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 1.6e-24 116.3 69 79.7
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.6e-24 116.3 68 76.5
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.6e-24 116.3 68 76.5
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.1e-24 115.9 69 78.3
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 2.8e-24 115.5 69 76.8
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 2.8e-24 115.5 69 75.4
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 3.6e-24 115.2 69 75.4
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 3.6e-24 115.2 69 75.4
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 3.6e-24 115.2 71 74.6
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 3.6e-24 115.2 69 75.4
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 3.6e-24 115.2 69 75.4
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 4.7e-24 114.8 69 73.9
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 4.7e-24 114.8 69 78.3
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 6.2e-24 114.4 69 78.3
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 8.0e-24 114.0 67 77.6
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 8.0e-24 114.0 69 72.5
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 8.0e-24 114.0 69 75.4
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 8.0e-24 114.0 69 75.4
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 8.0e-24 114.0 69 75.4
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 8.0e-24 114.0 69 75.4
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 8.0e-24 114.0 69 73.9
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 1.0e-23 113.6 69 76.8
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 1.0e-23 113.6 69 73.9
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 1.0e-23 113.6 69 73.9
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 1.4e-23 113.2 71 71.8
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 1.4e-23 113.2 69 75.4
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 1.8e-23 112.8 69 76.8
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 1.8e-23 112.8 70 72.9
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 2.3e-23 112.5 69 72.5
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 2.3e-23 112.5 69 78.3
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 2.3e-23 112.5 69 73.9
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 3.1e-23 112.1 69 71.0
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.1e-23 112.1 69 73.9
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.1e-23 112.1 69 73.9
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 3.1e-23 112.1 69 79.7
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 4.0e-23 111.7 69 76.8
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 4.0e-23 111.7 69 75.4
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 6.8e-23 110.9 69 71.0
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 6.8e-23 110.9 69 72.5
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 6.8e-23 110.9 71 73.2
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 6.8e-23 110.9 69 72.5
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 8.9e-23 110.5 69 78.3
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 8.9e-23 110.5 68 73.5
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 8.9e-23 110.5 68 73.5
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 8.9e-23 110.5 68 73.5
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 1.5e-22 109.8 69 72.5
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 1.5e-22 109.8 69 73.9
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 1.5e-22 109.8 69 71.0
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 2.0e-22 109.4 69 71.0
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 2.0e-22 109.4 69 71.0
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 2.6e-22 109.0 69 72.5
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 3.4e-22 108.6 69 73.9
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 4.4e-22 108.2 72 70.8
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 4.4e-22 108.2 69 69.6
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 5.8e-22 107.8 70 70.0
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 9.8e-22 107.1 68 73.5
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 1.7e-21 106.3 69 71.0
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 1.7e-21 106.3 70 74.3
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 2.9e-21 105.5 69 65.2
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 3.7e-21 105.1 69 68.1
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 3.7e-21 105.1 69 69.6
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 4.9e-21 104.8 69 71.0
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 4.9e-21 104.8 69 69.6
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.9e-21 104.8 69 69.6
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.9e-21 104.8 69 68.1
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 4.9e-21 104.8 69 71.0
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 4.9e-21 104.8 69 65.2
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 8.3e-21 104.0 69 69.6
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 8.3e-21 104.0 70 67.1
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 8.3e-21 104.0 69 68.1
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 1.9e-20 102.8 69 68.1
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 3.2e-20 102.1 69 66.7
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 3.2e-20 102.1 71 63.4
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 4.1e-20 101.7 69 69.6
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 7.0e-20 100.9 69 66.7
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 2.0e-19 99.4 66 69.7
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 2.7e-19 99.0 68 69.1
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 2.7e-19 99.0 68 69.1
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 2.7e-19 99.0 52 84.6
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 3.5e-19 98.6 60 78.3
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 3.5e-19 98.6 68 66.2
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 4.6e-19 98.2 69 66.7
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 7.8e-19 97.4 51 82.4
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 1.0e-18 97.1 70 68.6
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 1.0e-18 97.1 68 67.6
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 1.3e-18 96.7 69 65.2
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 1.3e-18 96.7 64 68.8
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.3e-18 95.9 69 65.2
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 3.9e-18 95.1 69 65.2
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.9e-18 95.1 69 65.2
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 5.0e-18 94.7 69 63.8
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.0e-18 94.7 69 63.8
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 6.6e-18 94.4 69 63.8
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 6.6e-18 94.4 69 63.8
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 6.6e-18 94.4 69 68.1
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 1.1e-17 93.6 52 78.8
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 1.1e-17 93.6 69 62.3
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 1.1e-17 93.6 68 63.2
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.9e-17 92.8 69 62.3
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.9e-17 92.8 64 60.9
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 3.3e-17 92.0 69 62.3
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.6e-17 91.3 69 62.3
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.6e-17 91.3 69 62.3
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.2e-16 90.1 52 75.0
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 2.1e-16 89.4 52 73.1
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 4.7e-16 88.2 66 65.2
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 3.1e-15 85.5 66 57.6
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 3.1e-15 85.5 67 56.7
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 4.0e-15 85.1 63 65.1
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 8.9e-15 84.0 52 73.1
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 1.5e-14 83.2 74 50.0
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.6e-14 82.4 67 55.2
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 2.6e-14 82.4 40 82.5
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 2.6e-14 82.4 64 62.5
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 3.4e-14 82.0 69 52.2
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 1.3e-13 80.1 40 85.0
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 4.9e-13 78.2 40 77.5
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 4.9e-13 78.2 40 77.5
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 4.9e-13 78.2 40 77.5
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 6.4e-13 77.8 94 42.6
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.9e-12 76.3 56 60.7
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 3.2e-12 75.5 57 59.6
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 3.2e-12 75.5 57 59.6
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 3.2e-12 75.5 40 82.5
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 5.4e-12 74.7 40 75.0
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.2e-11 73.6 48 70.8
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 2.1e-11 72.8 66 43.9
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 1.3e-10 70.1 41 73.2
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 3.0e-10 68.9 39 82.1
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 3.9e-10 68.6 56 50.0
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 7.3e-09 64.3 69 43.5
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 4.7e-08 61.6 62 43.5
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 8.1e-08 60.8 63 49.2
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.8e-07 59.7 69 46.4
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 3.1e-07 58.9 70 44.3
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 6.8e-07 57.8 31 83.9
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 1.2e-06 57.0 68 41.2
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 7.6e-06 54.3 38 63.2


User provided reference genes

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