Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g31090 Nelumbo nucifera HOM05D000478 ORTHO05D000345 8.3e-24 112.8 56 100.0
Nn3g19335 Nelumbo nucifera HOM05D000478 ORTHO05D278188 1.4e-15 85.5 51 84.3
Nn3g20371 Nelumbo nucifera HOM05D000478 ORTHO05D000345 2.4e-15 84.7 47 87.2
PSO541G0710 Papaver somniferum HOM05D000478 ORTHO05D000345 2.6e-09 64.7 40 75.0
PSO675G2244 Papaver somniferum HOM05D000478 ORTHO05D000345 2.6e-09 64.7 40 75.0
TAR627G0698 Trochodendron aralioides HOM05D000478 ORTHO05D000345 3.4e-09 64.3 47 61.7
MBI18_g11229_MAGBIO Magnolia biondii HOM05D000478 ORTHO05D000345 4.4e-09 63.9 45 62.2
Ah.11g049050 Amaranthus hybridus HOM05D000478 ORTHO05D000345 7.5e-09 63.2 47 59.6
CDE06G2077 Ceratophyllum demersum HOM05D000478 ORTHO05D000345 9.8e-09 62.8 46 63.0
Aqoxy2G00720 Aquilegia oxysepala HOM05D000478 ORTHO05D000345 6.4e-08 60.1 47 57.4
EL10As5g23573 Beta vulgaris HOM05D000478 ORTHO05D000345 8.3e-08 59.7 46 56.5
AUR62024609 Chenopodium quinoa HOM05D000478 ORTHO05D000345 8.3e-08 59.7 47 53.2
Pp3c6_29200 Physcomitrium patens HOM05D000478 ORTHO05D000345 1.1e-07 59.3 45 60.0
BcaB03g15784 Brassica carinata HOM05D000478 ORTHO05D000345 1.4e-07 58.9 41 58.5
PSO170G0734 Papaver somniferum HOM05D000478 ORTHO05D000345 1.4e-07 58.9 40 65.0
PSO357G0188 Papaver somniferum HOM05D000478 ORTHO05D000345 1.4e-07 58.9 40 65.0
Zm00001eb173160 Zea mays HOM05D000478 ORTHO05D000345 1.4e-07 58.9 43 58.1
AUR62011763 Chenopodium quinoa HOM05D000478 ORTHO05D000345 1.9e-07 58.5 47 53.2
SMO358G0092 Selaginella moellendorffii HOM05D000478 ORTHO05D000345 1.9e-07 58.5 43 58.1
CDE03G0313 Ceratophyllum demersum HOM05D000478 ORTHO05D000345 2.4e-07 58.2 46 58.7
Nn3g21770 Nelumbo nucifera HOM05D000478 ORTHO05D000345 2.4e-07 58.2 40 62.5
CiPaw.07G120100 Carya illinoinensis HOM05D000478 ORTHO05D000345 4.1e-07 57.4 41 58.5
TWI63G0581 Tripterygium wilfordii HOM05D000478 ORTHO05D000345 4.1e-07 57.4 40 60.0
QL05p089373 Quercus lobata HOM05D000478 ORTHO05D000345 5.4e-07 57.0 40 60.0
Ah.02g112520 Amaranthus hybridus HOM05D000478 ORTHO05D000345 9.2e-07 56.2 47 51.1
Potri.002G192600 Populus trichocarpa HOM05D000478 ORTHO05D000345 9.2e-07 56.2 40 62.5
Sabra02G0163300 Salix brachista HOM05D000478 ORTHO05D000345 9.2e-07 56.2 40 62.5
A10p01160 Brassica napus HOM05D000478 ORTHO05D000345 1.2e-06 55.8 41 53.7
BraA10t42395Z Brassica rapa HOM05D000478 ORTHO05D000345 1.2e-06 55.8 41 53.7
CiPaw.07G119900 Carya illinoinensis HOM05D000478 ORTHO05D000345 1.2e-06 55.8 41 56.1
DCAR_002880 Daucus carota HOM05D000478 ORTHO05D000345 1.2e-06 55.8 40 57.5
Lalb_Chr02g0146921 Lupinus albus HOM05D000478 ORTHO05D000345 1.2e-06 55.8 41 56.1
MBI18_g35546_MAGBIO Magnolia biondii HOM05D000478 ORTHO05D000345 1.2e-06 55.8 40 62.5
Manes.01G230400 Manihot esculenta HOM05D000478 ORTHO05D000345 1.2e-06 55.8 39 61.5
Mapoly0074s0011 Marchantia polymorpha HOM05D000478 ORTHO05D000345 1.2e-06 55.8 46 50.0
Os08g0131300 Oryza sativa ssp. japonica HOM05D000478 ORTHO05D000345 1.2e-06 55.8 47 59.6
Aqoxy2G02662 Aquilegia oxysepala HOM05D000478 ORTHO05D000345 1.6e-06 55.5 40 57.5
Haze_05060 Corylus avellana HOM05D000478 ORTHO05D000345 1.6e-06 55.5 40 57.5
THA.LOC104801308 Tarenaya hassleriana HOM05D000478 ORTHO05D000345 1.6e-06 55.5 40 57.5
Aqoxy4G00131 Aquilegia oxysepala HOM05D000478 ORTHO05D000345 2.1e-06 55.1 40 57.5
Haze_00554 Corylus avellana HOM05D000478 ORTHO05D000345 2.1e-06 55.1 39 56.4
Thhalv10007347m.g Eutrema salsugineum HOM05D000478 ORTHO05D000345 2.1e-06 55.1 41 56.1
QL03p015411 Quercus lobata HOM05D000478 ORTHO05D000345 2.1e-06 55.1 40 57.5
Cfa006722 Carpinus fangiana HOM05D000478 ORTHO05D000345 2.7e-06 54.7 39 61.5
THA.LOC104800824 Tarenaya hassleriana HOM05D000478 ORTHO05D000345 2.7e-06 54.7 46 50.0
Zm00001eb063420 Zea mays HOM05D000478 ORTHO05D000345 2.7e-06 54.7 41 58.5
Cfa015938 Carpinus fangiana HOM05D000478 ORTHO05D000345 3.5e-06 54.3 39 56.4
CDE09G1387 Ceratophyllum demersum HOM05D000478 ORTHO05D000345 3.5e-06 54.3 46 47.8
Eucgr.A01977 Eucalyptus grandis HOM05D000478 ORTHO05D000345 3.5e-06 54.3 40 55.0
FAN02G2648 Fragaria x ananassa HOM05D000478 ORTHO05D000345 3.5e-06 54.3 40 57.5
Nn3g21769 Nelumbo nucifera HOM05D000478 ORTHO05D000345 3.5e-06 54.3 40 57.5
RcHm_v2.0_Chr7g0240281 Rosa chinensis HOM05D000478 ORTHO05D000345 3.5e-06 54.3 37 59.5
Sp1g01470 Schrenkiella parvula HOM05D000478 ORTHO05D000345 3.5e-06 54.3 41 53.7
BcaC04g24059 Brassica carinata HOM05D000478 ORTHO05D000345 4.6e-06 53.9 41 53.7
Cpa.g.sc49.108 Carica papaya HOM05D000478 ORTHO05D000345 4.6e-06 53.9 39 56.4
Cc05_g09500 Coffea canephora HOM05D000478 ORTHO05D000345 4.6e-06 53.9 40 52.5
DCAR_021315 Daucus carota HOM05D000478 ORTHO05D000345 4.6e-06 53.9 47 48.9
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 4.6e-06 53.9 40 60.0
FvH4_5g38280 Fragaria vesca HOM05D000478 ORTHO05D000345 4.6e-06 53.9 37 59.5
FAN04G2846 Fragaria x ananassa HOM05D000478 ORTHO05D000345 4.6e-06 53.9 37 59.5
FAN08G0022 Fragaria x ananassa HOM05D000478 ORTHO05D000345 4.6e-06 53.9 37 59.5
FAN18G0857 Fragaria x ananassa HOM05D000478 ORTHO05D000345 4.6e-06 53.9 37 59.5
Lj5g0012277 Lotus japonicus HOM05D000478 ORTHO05D000345 4.6e-06 53.9 46 52.2
MD17G1278500 Malus domestica HOM05D000478 ORTHO05D000345 4.6e-06 53.9 41 53.7
PSO210G1582 Papaver somniferum HOM05D000478 ORTHO05D000345 4.6e-06 53.9 45 44.4
SMO118G0498 Selaginella moellendorffii HOM05D000478 ORTHO05D000345 4.6e-06 53.9 40 57.5
THA.LOC104815918 Tarenaya hassleriana HOM05D000478 ORTHO05D000345 4.6e-06 53.9 38 57.9
TAR626G0605 Trochodendron aralioides HOM05D000478 ORTHO05D000345 4.6e-06 53.9 40 55.0
Atru.chr13.1290 Acer truncatum HOM05D000478 ORTHO05D000345 6.0e-06 53.5 39 56.4
Aa31LG5G1600 Aethionema arabicum HOM05D000478 ORTHO05D000345 6.0e-06 53.5 41 56.1
AT1G02390 Arabidopsis thaliana HOM05D000478 ORTHO05D000345 6.0e-06 53.5 41 51.2
AT1G06520 Arabidopsis thaliana HOM05D000478 ORTHO05D000345 6.0e-06 53.5 44 54.5
BcaC05g24622 Brassica carinata HOM05D000478 ORTHO05D000345 6.0e-06 53.5 41 51.2
C05p01190 Brassica napus HOM05D000478 ORTHO05D000345 6.0e-06 53.5 41 51.2
BolC5t28901H Brassica oleracea HOM05D000478 ORTHO05D000345 6.0e-06 53.5 41 51.2
AUR62000417 Chenopodium quinoa HOM05D000478 ORTHO05D000345 6.0e-06 53.5 41 51.2
COL.COLO4_08447 Corchorus olitorius HOM05D000478 ORTHO05D000345 6.0e-06 53.5 40 55.0
DCAR_021378 Daucus carota HOM05D000478 ORTHO05D000345 6.0e-06 53.5 47 46.8
FAN05G4248 Fragaria x ananassa HOM05D000478 ORTHO05D000345 6.0e-06 53.5 40 55.0
FAN14G0136 Fragaria x ananassa HOM05D000478 ORTHO05D000345 6.0e-06 53.5 40 55.0
Glyma.03G221100 Glycine max HOM05D000478 ORTHO05D000345 6.0e-06 53.5 41 58.5
Hma1.2p1_0965F.1_g242070 Hydrangea macrophylla HOM05D000478 ORTHO05D000345 6.0e-06 53.5 40 57.5
PSO675G0947 Papaver somniferum HOM05D000478 ORTHO05D000345 6.0e-06 53.5 40 62.5
Prupe.3G007500 Prunus persica HOM05D000478 ORTHO05D000345 6.0e-06 53.5 46 47.8
QL12p035620 Quercus lobata HOM05D000478 ORTHO05D000345 6.0e-06 53.5 39 56.4
RcHm_v2.0_Chr2g0151571 Rosa chinensis HOM05D000478 ORTHO05D000345 6.0e-06 53.5 40 55.0
PGSC0003DMG400017301 Solanum tuberosum HOM05D000478 ORTHO05D000345 6.0e-06 53.5 47 53.2
AL1G11740 Arabidopsis lyrata HOM05D000478 ORTHO05D000345 7.8e-06 53.1 41 53.7
EL10Ac4g09489 Beta vulgaris HOM05D000478 ORTHO05D000345 7.8e-06 53.1 46 47.8
CARHR006140 Cardamine hirsuta HOM05D000478 ORTHO05D000345 7.8e-06 53.1 44 56.8
CiPaw.06G023300 Carya illinoinensis HOM05D000478 ORTHO05D000345 7.8e-06 53.1 39 56.4
Ciclev10031163m.g Citrus clementina HOM05D000478 ORTHO05D000345 7.8e-06 53.1 40 55.0
DCAR_012328 Daucus carota HOM05D000478 ORTHO05D000345 7.8e-06 53.1 41 53.7
Gohir.D06G040700 Gossypium hirsutum HOM05D000478 ORTHO05D000345 7.8e-06 53.1 45 53.3
Gorai.010G045500 Gossypium raimondii HOM05D000478 ORTHO05D000345 7.8e-06 53.1 45 53.3
Lj1g0024680 Lotus japonicus HOM05D000478 ORTHO05D000345 7.8e-06 53.1 46 54.3
Nn3g21767 Nelumbo nucifera HOM05D000478 ORTHO05D000345 7.8e-06 53.1 39 59.0
Pp3c5_1510 Physcomitrium patens HOM05D000478 ORTHO05D000345 7.8e-06 53.1 46 50.0
RcHm_v2.0_Chr3g0487121 Rosa chinensis HOM05D000478 ORTHO05D000345 7.8e-06 53.1 41 51.2
Sed0008733 Sechium edule HOM05D000478 ORTHO05D000345 7.8e-06 53.1 41 56.1
Thecc.08G114300 Theobroma cacao HOM05D000478 ORTHO05D000345 7.8e-06 53.1 39 59.0
TWI59G0881 Tripterygium wilfordii HOM05D000478 ORTHO05D000345 7.8e-06 53.1 41 51.2
TAR365G1085 Trochodendron aralioides HOM05D000478 ORTHO05D000345 7.8e-06 53.1 40 52.5
VMungo0720G1687 Vigna mungo HOM05D000478 ORTHO05D000345 7.8e-06 53.1 40 55.0


User provided reference genes

Program Settings