Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g31054 Nelumbo nucifera HOM05D003571 ORTHO05D004193 3.1e-69 265.0 135 100.0
Nn2g11512 Nelumbo nucifera HOM05D003571 ORTHO05D004193 5.0e-59 231.1 132 90.2
Nn6g35049 Nelumbo nucifera HOM05D003571 ORTHO05D004193 5.2e-56 221.1 119 94.1
Nn2g13718 Nelumbo nucifera HOM05D003571 ORTHO05D004193 3.6e-41 171.8 122 74.6
TAR369G1024 Trochodendron aralioides HOM05D003571 ORTHO05D004193 6.4e-30 134.4 119 62.2
Dinv37294 Davidia involucrata HOM05D003571 ORTHO05D004193 1.2e-23 113.6 134 47.8
PSO063G1543 Papaver somniferum HOM05D003571 ORTHO05D004193 1.2e-23 113.6 126 50.0
PSO339G3261 Papaver somniferum HOM05D003571 ORTHO05D004193 2.0e-23 112.8 126 50.8
TAR636G1534 Trochodendron aralioides HOM05D003571 ORTHO05D004193 2.2e-22 109.4 117 53.0
TAR636G0639 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.9e-21 106.3 117 52.1
TAR623G0708 Trochodendron aralioides HOM05D003571 ORTHO05D004193 3.2e-21 105.5 155 43.2
Haze_20580 Corylus avellana HOM05D003571 ORTHO05D004193 1.6e-20 103.2 130 46.2
Cfa017571 Carpinus fangiana HOM05D003571 ORTHO05D004193 2.1e-20 102.8 120 48.3
Duzib106G0011 Durio zibethinus HOM05D003571 ORTHO05D004193 4.6e-20 101.7 128 46.1
Thecc.05G061900 Theobroma cacao HOM05D003571 ORTHO05D004193 4.6e-20 101.7 128 44.5
CSS0031681 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 3.0e-19 99.0 120 48.3
QL07p044235 Quercus lobata HOM05D003571 ORTHO05D004193 3.0e-19 99.0 132 43.9
CSS0040711 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 3.9e-19 98.6 120 48.3
Duzib093G0844 Durio zibethinus HOM05D003571 ORTHO05D004193 2.1e-17 92.8 130 43.1
Gohir.A11G324380 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.1e-17 92.8 118 46.6
Dinv35764 Davidia involucrata HOM05D003571 ORTHO05D004193 2.8e-17 92.4 139 41.0
Aqoxy1G01208 Aquilegia oxysepala HOM05D003571 ORTHO05D004193 3.6e-17 92.0 119 45.4
CiPaw.09G174600 Carya illinoinensis HOM05D003571 ORTHO05D004193 8.1e-17 90.9 127 40.9
Gorai.007G373800 Gossypium raimondii HOM05D003571 ORTHO05D004193 8.1e-17 90.9 125 43.2
Gohir.D11G343600 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.4e-16 90.1 125 43.2
TWI74G0293 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 2.4e-16 89.4 119 46.2
TWI53G0828 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 5.3e-16 88.2 126 43.7
Actinidia19664 Actinidia chinensis HOM05D003571 ORTHO05D004193 3.4e-15 85.5 120 43.3
CSS0014133 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 4.5e-15 85.1 124 42.7
CSS0046537 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 4.5e-15 85.1 124 42.7
Atru.chr8.1854 Acer truncatum HOM05D003571 ORTHO05D004193 5.8e-15 84.7 111 44.1
Rhsim04G0146600 Rhododendron simsii HOM05D003571 ORTHO05D004193 5.8e-15 84.7 116 44.0
COL.COLO4_26995 Corchorus olitorius HOM05D003571 ORTHO05D004193 7.6e-15 84.3 124 42.7
Gohir.D09G144900 Gossypium hirsutum HOM05D003571 ORTHO05D004193 7.6e-15 84.3 128 38.3
Gorai.006G166200 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.3e-14 83.6 128 37.5
Gohir.D04G112300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 8.4e-14 80.9 120 42.5
Potri.006G127100 Populus trichocarpa HOM05D003571 ORTHO05D004193 8.4e-14 80.9 113 46.9
Sabra16G0096300 Salix brachista HOM05D003571 ORTHO05D004193 8.4e-14 80.9 131 41.2
Gohir.A04G073500 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.1e-13 80.5 120 42.5
CANSAT80G1173 Cannabis sativa HOM05D003571 ORTHO05D004193 1.4e-13 80.1 130 36.9
Ah.05g168560 Amaranthus hybridus HOM05D003571 ORTHO05D004193 1.9e-13 79.7 117 41.0
Gorai.009G416700 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.9e-13 79.7 120 41.7
Prupe.6G235600 Prunus persica HOM05D003571 ORTHO05D004193 1.9e-13 79.7 110 38.2
Glyma.03G181400 Glycine max HOM05D003571 ORTHO05D004193 2.4e-13 79.3 120 41.7
AUR62022345 Chenopodium quinoa HOM05D003571 ORTHO05D004193 3.2e-13 79.0 121 42.1
Glyma.13G145100 Glycine max HOM05D003571 ORTHO05D004193 3.2e-13 79.0 110 40.9
Gohir.A09G149000 Gossypium hirsutum HOM05D003571 ORTHO05D004193 3.2e-13 79.0 128 35.9
Rhsim04G0146300 Rhododendron simsii HOM05D003571 ORTHO05D004193 4.2e-13 78.6 115 41.7
EL10Ac1g01686 Beta vulgaris HOM05D003571 ORTHO05D004193 7.1e-13 77.8 113 43.4
AUR62034361 Chenopodium quinoa HOM05D003571 ORTHO05D004193 7.1e-13 77.8 121 40.5
Lj3C982T5 Lonicera japonica HOM05D003571 ORTHO05D004193 7.1e-13 77.8 123 41.5
Glyma.10G058300 Glycine max HOM05D003571 ORTHO05D004193 9.3e-13 77.4 138 37.0
Lj5g0026041 Lotus japonicus HOM05D003571 ORTHO05D004193 1.2e-12 77.0 142 36.6
Actinidia31342 Actinidia chinensis HOM05D003571 ORTHO05D004193 1.6e-12 76.6 116 43.1
MBI07_g30986_MAGBIO Magnolia biondii HOM05D003571 ORTHO05D004193 1.6e-12 76.6 122 39.3
Sc02g0001770 Simmondsia chinensis HOM05D003571 ORTHO05D004193 2.1e-12 76.3 120 41.7
Potri.016G090800 Populus trichocarpa HOM05D003571 ORTHO05D004193 2.7e-12 75.9 119 45.4
vmacro08767 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 2.7e-12 75.9 120 40.0
Ciclev10010923m.g Citrus clementina HOM05D003571 ORTHO05D004193 3.5e-12 75.5 119 41.2
Nitab4.5_0027568g0010 Nicotiana tabacum HOM05D003571 ORTHO05D004193 4.6e-12 75.1 132 37.9
Hund17522 Selenicereus undatus HOM05D003571 ORTHO05D004193 6.0e-12 74.7 139 36.7
ClCG04G009140 Citrullus lanatus HOM05D003571 ORTHO05D004193 1.0e-11 73.9 129 38.8
Lj1g0021596 Lotus japonicus HOM05D003571 ORTHO05D004193 1.3e-11 73.6 137 40.1
CsaV3_6G039650 Cucumis sativus L. HOM05D003571 ORTHO05D004193 1.8e-11 73.2 110 42.7
Peaxi162Scf00123g00089 Petunia axillaris HOM05D003571 ORTHO05D004193 3.0e-11 72.4 120 43.3
Sabra06G0100000 Salix brachista HOM05D003571 ORTHO05D004193 3.0e-11 72.4 119 43.7
Manes.08G008200 Manihot esculenta HOM05D003571 ORTHO05D004193 5.1e-11 71.6 114 42.1
arahy.Tifrunner.gnm1.ann1.W3VJBC Arachis hypogaea HOM05D003571 ORTHO05D004193 6.7e-11 71.2 124 37.9
VMungo0720G3123 Vigna mungo HOM05D003571 ORTHO05D004193 6.7e-11 71.2 140 35.0
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 8.7e-11 70.9 113 41.6
Manes.09G063600 Manihot esculenta HOM05D003571 ORTHO05D004193 8.7e-11 70.9 139 38.8
arahy.Tifrunner.gnm1.ann1.QCG7AI Arachis hypogaea HOM05D003571 ORTHO05D004193 1.5e-10 70.1 124 37.9
Lalb_Chr25g0289091 Lupinus albus HOM05D003571 ORTHO05D004193 4.3e-10 68.6 127 34.6
Phvul.007G150600 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 4.3e-10 68.6 140 34.3
RcHm_v2.0_Chr3g0469791 Rosa chinensis HOM05D003571 ORTHO05D004193 5.6e-10 68.2 113 35.4
GSVIVG01025700001 Vitis vinifera HOM05D003571 ORTHO05D004193 5.6e-10 68.2 83 43.4
Ca_08847_v3 Cicer arietinum L. HOM05D003571 ORTHO05D004193 7.4e-10 67.8 120 37.5
Rhsim05G0180200 Rhododendron simsii HOM05D003571 ORTHO05D004193 7.4e-10 67.8 130 36.9
MD04G1096400 Malus domestica HOM05D003571 ORTHO05D004193 9.6e-10 67.4 122 35.2
Migut.J00540 Erythranthe guttata HOM05D003571 ORTHO05D004193 1.3e-09 67.0 120 35.8
PGSC0003DMG400021547 Solanum tuberosum HOM05D003571 ORTHO05D004193 1.3e-09 67.0 121 40.5
Cc00_g20760 Coffea canephora HOM05D003571 ORTHO05D004193 3.7e-09 65.5 120 40.8
arahy.Tifrunner.gnm1.ann1.4G0IWV Arachis hypogaea HOM05D003571 ORTHO05D004193 4.8e-09 65.1 119 36.1
Sed0010243 Sechium edule HOM05D003571 ORTHO05D004193 4.8e-09 65.1 111 41.4
MSTRG.19160 Avicennia marina HOM05D003571 ORTHO05D004193 6.2e-09 64.7 119 36.1
MELO3C014230.2 Cucumis melo HOM05D003571 ORTHO05D004193 6.2e-09 64.7 110 40.9
MD12G1117400 Malus domestica HOM05D003571 ORTHO05D004193 6.2e-09 64.7 117 35.0
Sc20g0005320 Simmondsia chinensis HOM05D003571 ORTHO05D004193 6.2e-09 64.7 125 37.6
A10p32660 Brassica napus HOM05D003571 ORTHO05D004193 8.2e-09 64.3 110 36.4
Eucgr.K01247 Eucalyptus grandis HOM05D003571 ORTHO05D004193 8.2e-09 64.3 131 35.1
BraA10t45303Z Brassica rapa HOM05D003571 ORTHO05D004193 1.1e-08 63.9 110 36.4
Carub.0006s0208 Capsella rubella HOM05D003571 ORTHO05D004193 1.4e-08 63.5 118 36.4
Lalb_Chr01g0018771 Lupinus albus HOM05D003571 ORTHO05D004193 1.8e-08 63.2 94 38.3
ECA248G2435 Erigeron canadensis HOM05D003571 ORTHO05D004193 2.4e-08 62.8 131 36.6
C09p73500 Brassica napus HOM05D003571 ORTHO05D004193 4.0e-08 62.0 110 36.4
BolC9t60082H Brassica oleracea HOM05D003571 ORTHO05D004193 4.0e-08 62.0 110 36.4
arahy.Tifrunner.gnm1.ann1.SVA4CI Arachis hypogaea HOM05D003571 ORTHO05D004193 5.3e-08 61.6 119 36.1
THA.LOC104816665 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 5.3e-08 61.6 117 38.5
AL6G12590 Arabidopsis lyrata HOM05D003571 ORTHO05D004193 6.9e-08 61.2 118 35.6
Sp6g39460 Schrenkiella parvula HOM05D003571 ORTHO05D004193 6.9e-08 61.2 118 36.4
Phvul.001G177500 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 9.0e-08 60.8 139 31.7
MSTRG.5747 Avicennia marina HOM05D003571 ORTHO05D004193 1.2e-07 60.5 114 33.3
Lj2C113T5 Lonicera japonica HOM05D003571 ORTHO05D004193 1.2e-07 60.5 127 37.0
FvH4_6g16040 Fragaria vesca HOM05D003571 ORTHO05D004193 1.5e-07 60.1 123 30.9
FAN14G4150 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.5e-07 60.1 123 30.9
SalBow3G2504 Salvia bowleyana HOM05D003571 ORTHO05D004193 1.5e-07 60.1 132 31.1
SalBow3G3339 Salvia bowleyana HOM05D003571 ORTHO05D004193 1.5e-07 60.1 132 31.1
AT5G03280 Arabidopsis thaliana HOM05D003571 ORTHO05D004193 2.0e-07 59.7 119 34.5
BcaC06g32048 Brassica carinata HOM05D003571 ORTHO05D004193 2.0e-07 59.7 110 36.4
FAN09G2327 Fragaria x ananassa HOM05D003571 ORTHO05D004193 2.6e-07 59.3 123 30.9
TPR.G16043 Trifolium pratense HOM05D003571 ORTHO05D004193 2.6e-07 59.3 126 31.7
BcaNung06157 Brassica carinata HOM05D003571 ORTHO05D004193 3.4e-07 58.9 110 35.5
FAN02G1851 Fragaria x ananassa HOM05D003571 ORTHO05D004193 3.4e-07 58.9 123 30.9
PGR142G1072 Punica granatum HOM05D003571 ORTHO05D004193 3.4e-07 58.9 126 37.3
Sopen09g002710 Solanum pennellii HOM05D003571 ORTHO05D004193 3.4e-07 58.9 121 38.8
VMungo1383G0779 Vigna mungo HOM05D003571 ORTHO05D004193 3.4e-07 58.9 140 30.7
Thhalv10012456m.g Eutrema salsugineum HOM05D003571 ORTHO05D004193 4.5e-07 58.5 117 34.2
FAN05G4723 Fragaria x ananassa HOM05D003571 ORTHO05D004193 4.5e-07 58.5 123 30.9
CARHR210060 Cardamine hirsuta HOM05D003571 ORTHO05D004193 5.8e-07 58.2 110 35.5
Oeu016972.1 Olea europaea HOM05D003571 ORTHO05D004193 5.8e-07 58.2 72 41.7
SGA_v2.0_scaffold126G33934 Striga asiatica HOM05D003571 ORTHO05D004193 5.8e-07 58.2 125 32.0
Sed0017601 Sechium edule HOM05D003571 ORTHO05D004193 7.6e-07 57.8 111 37.8
Oeu005332.2 Olea europaea HOM05D003571 ORTHO05D004193 1.3e-06 57.0 130 32.3
Psat3g041280 Pisum sativum HOM05D003571 ORTHO05D004193 1.3e-06 57.0 128 32.8
ATR0048G031 Amborella trichopoda HOM05D003571 ORTHO05D004193 2.9e-06 55.8 47 55.3
Solyc09g007870.3 Solanum lycopersicum HOM05D003571 ORTHO05D004193 3.8e-06 55.5 121 37.2
CAN.G363.21 Capsicum annuum HOM05D003571 ORTHO05D004193 4.9e-06 55.1 120 37.5
Medtr0041s0030 Medicago truncatula HOM05D003571 ORTHO05D004193 4.9e-06 55.1 116 31.0
THA.LOC104826906 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 6.5e-06 54.7 122 33.6


User provided reference genes

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