Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 2.2e-249 865.1 430 100.0
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 9.2e-147 524.2 368 69.3
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 2.0e-138 496.5 355 67.3
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 2.4e-131 473.0 366 63.1
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 8.1e-127 458.0 367 61.0
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 6.0e-122 441.8 342 62.6
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 4.3e-120 435.6 356 61.0
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 1.1e-118 431.0 294 67.7
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 1.4e-118 430.6 372 58.3
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 2.9e-116 422.9 375 58.1
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 1.7e-113 413.7 315 64.8
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 6.6e-113 411.8 370 56.5
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 1.9e-112 410.2 382 54.7
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 3.3e-112 409.5 379 57.0
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 4.3e-112 409.1 358 56.1
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 9.6e-112 407.9 311 63.3
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 1.3e-111 407.5 367 56.7
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 4.8e-111 405.6 311 63.0
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 8.1e-111 404.8 342 58.5
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 1.8e-110 403.7 281 66.9
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 3.1e-110 402.9 371 54.4
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 3.1e-110 402.9 355 56.6
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 3.1e-110 402.9 341 58.1
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 4.0e-110 402.5 326 57.7
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 9.0e-110 401.4 379 54.4
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 1.2e-109 401.0 373 53.6
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.2e-109 401.0 330 59.4
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 1.5e-109 400.6 384 55.2
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 4.4e-109 399.1 330 59.1
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.4e-109 399.1 372 54.8
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 6.4e-108 395.2 392 51.3
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 8.4e-108 394.8 330 58.2
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 1.4e-107 394.0 296 62.2
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 3.2e-107 392.9 338 58.3
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 4.2e-107 392.5 328 58.2
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 5.4e-107 392.1 337 59.6
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 1.2e-106 391.0 322 59.6
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 1.6e-106 390.6 313 59.1
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 4.6e-106 389.0 336 57.1
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 6.0e-106 388.7 297 62.6
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 7.8e-106 388.3 298 62.1
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 6.6e-105 385.2 341 55.7
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 3.3e-104 382.9 326 56.4
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 4.3e-104 382.5 279 65.9
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 8.1e-103 378.3 326 57.7
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 4.0e-102 375.9 376 51.1
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 2.0e-101 373.6 306 59.2
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 3.4e-101 372.9 344 54.4
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 1.7e-100 370.5 305 58.7
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 2.2e-100 370.2 295 62.0
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 2.2e-100 370.2 296 62.5
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 2.2e-100 370.2 302 61.6
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 3.8e-100 369.4 338 54.7
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 4.9e-100 369.0 344 54.7
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 6.4e-100 368.6 355 53.0
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 1.4e-99 367.5 307 59.6
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 3.2e-99 366.3 361 53.5
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 5.4e-99 365.5 325 56.3
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 5.4e-99 365.5 286 59.1
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 1.6e-98 364.0 305 56.4
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 6.0e-98 362.1 295 59.0
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 6.0e-98 362.1 316 53.5
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 1.3e-97 360.9 305 56.4
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 1.8e-97 360.5 302 58.6
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 8.7e-97 358.2 360 51.7
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 1.1e-96 357.8 359 52.1
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 1.9e-96 357.1 332 54.2
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 2.5e-96 356.7 323 53.6
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 3.3e-96 356.3 318 52.8
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 9.6e-96 354.8 367 52.3
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 2.1e-95 353.6 383 50.7
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 8.1e-95 351.7 370 49.7
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 1.4e-94 350.9 323 52.0
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 3.1e-94 349.7 321 56.4
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 4.5e-93 345.9 366 48.9
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 1.7e-92 344.0 357 49.3
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 4.2e-91 339.3 302 55.0
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 5.5e-91 339.0 368 48.1
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 5.5e-91 339.0 366 50.5
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 7.1e-91 338.6 300 54.7
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 2.1e-90 337.0 300 54.7
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 2.1e-90 337.0 241 65.1
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 8.7e-89 331.6 401 48.9
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 3.3e-88 329.7 301 53.2
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 9.6e-88 328.2 252 61.5
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 1.3e-87 327.8 294 55.8
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 4.5e-85 319.3 309 54.0
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 2.2e-84 317.0 276 56.2
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 3.3e-80 303.1 278 54.0
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 1.2e-77 294.7 332 47.9
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 1.2e-74 284.6 291 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 9.1e-62 241.9 315 44.1
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 5.9e-61 239.2 339 40.4
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 1.8e-54 217.6 305 39.0
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 1.8e-49 201.1 299 38.1
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 9.8e-48 195.3 158 58.2
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 1.7e-47 194.5 166 57.8
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 5.4e-46 189.5 228 43.4
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.5e-45 186.4 168 54.8
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 2.0e-40 171.0 301 32.9
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 1.0e-33 148.7 127 58.3
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 5.7e-32 142.9 174 43.7
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 1.4e-30 138.3 103 64.1
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 1.2e-29 135.2 85 74.1
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.7e-26 123.2 142 45.8
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 1.6e-21 108.2 89 60.7
Cre12.g554600 Chlamydomonas reinhardtii HOM05D007297 ORTHO05D009352 1.9e-19 101.3 237 30.8
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 2.5e-19 100.9 304 26.6
MCO16G326 Micromonas commoda HOM05D007297 ORTHO05D268116 2.4e-06 57.8 105 31.4
Eucgr.L00579 Eucalyptus grandis HOM05D007297 ORTHO05D009352 5.4e-06 56.6 68 48.5


User provided reference genes

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