Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.0e-273 944.1 468 100.0
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.7e-152 542.7 457 63.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.8e-151 540.0 456 62.9
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 1.4e-145 520.4 461 61.8
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.8e-143 513.5 469 58.8
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 7.4e-142 508.1 470 57.4
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.2e-141 506.5 460 59.6
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.9e-137 493.4 467 57.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 5.5e-137 491.9 457 58.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 2.1e-136 490.0 460 58.0
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.0e-134 483.4 461 58.4
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.7e-134 481.1 461 57.7
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-132 477.2 460 56.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.8e-132 476.9 453 57.4
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 6.9e-132 474.9 457 56.7
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 5.9e-131 471.9 456 56.6
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 5.9e-131 471.9 469 56.3
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.0e-130 471.1 460 56.5
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.0e-130 471.1 457 56.9
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.7e-130 470.3 463 55.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.7e-130 470.3 465 54.6
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.9e-130 469.5 472 54.9
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 3.2e-129 466.1 460 55.9
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 5.5e-129 465.3 466 53.9
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 7.2e-129 464.9 460 55.0
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 9.4e-129 464.5 454 56.2
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.2e-128 464.2 468 55.1
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 3.6e-128 462.6 472 54.2
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.1e-127 458.8 461 55.3
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.1e-126 457.6 459 55.1
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.0e-126 456.8 454 56.4
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 9.7e-126 454.5 452 55.5
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.3e-125 454.1 461 55.3
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.7e-125 453.8 461 55.3
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 2.2e-125 453.4 455 54.1
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 3.7e-125 452.6 456 55.3
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 4.8e-125 452.2 460 53.3
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.4e-124 450.7 461 53.6
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.1e-124 449.1 470 54.3
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 4.1e-124 449.1 464 53.2
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 7.0e-124 448.4 456 53.3
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 7.0e-124 448.4 451 53.4
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.5e-123 446.0 456 52.9
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.9e-123 445.3 461 54.7
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 5.9e-123 445.3 458 54.1
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.7e-122 443.7 460 53.7
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.7e-122 443.7 460 53.7
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 3.8e-122 442.6 495 51.7
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 3.8e-122 442.6 451 53.7
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.5e-121 440.7 450 54.7
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 3.2e-121 439.5 466 53.4
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 4.2e-121 439.1 459 54.2
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 4.2e-121 439.1 463 53.1
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 7.2e-121 438.3 456 53.9
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 7.2e-121 438.3 463 53.1
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.1e-120 436.8 451 53.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.4e-119 434.1 461 53.4
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.3e-119 433.3 458 53.5
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 5.2e-119 432.2 467 52.5
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.5e-118 430.6 445 56.9
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 5.7e-118 428.7 458 52.2
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 7.4e-118 428.3 461 52.9
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 7.4e-118 428.3 458 53.9
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 9.7e-118 427.9 457 52.7
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.3e-117 427.6 457 53.6
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 4.8e-117 425.6 451 52.3
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 8.2e-117 424.9 450 52.4
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.8e-116 423.7 468 52.1
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-115 421.0 485 51.1
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.7e-114 417.2 454 53.5
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.5e-113 413.3 451 51.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 7.2e-113 411.8 456 50.7
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.3e-111 406.8 453 49.9
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 5.2e-111 405.6 462 50.6
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.2e-111 405.6 451 50.6
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.8e-111 405.2 453 50.6
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 8.8e-111 404.8 466 50.9
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 4.4e-110 402.5 455 50.3
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.8e-110 401.4 460 50.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.8e-109 399.8 461 49.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.8e-109 399.8 453 50.1
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 4.8e-109 399.1 453 49.7
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.1e-108 397.9 455 50.1
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.4e-108 396.7 451 49.9
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.2e-107 394.4 450 50.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 7.7e-107 391.7 457 47.3
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.3e-106 391.0 463 48.8
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 6.5e-106 388.7 433 52.9
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.1e-105 387.9 484 48.8
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.5e-105 387.5 451 49.2
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.6e-104 384.0 460 47.8
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 8.0e-104 381.7 463 48.8
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.8e-103 380.6 490 47.1
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.8e-103 380.6 453 49.9
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 2.0e-102 377.1 456 47.6
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 4.4e-102 375.9 460 48.3
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 3.7e-101 372.9 446 50.2
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.1e-100 369.4 283 66.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.3e-98 363.6 459 49.2
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 6.1e-96 355.5 282 63.8
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 2.6e-94 350.1 444 48.0
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.6e-94 350.1 444 47.7
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 9.8e-94 348.2 444 48.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.4e-92 344.4 439 47.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.2e-92 343.2 447 48.3
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 5.6e-89 332.4 375 52.0
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 7.3e-89 332.0 460 45.9
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 8.0e-88 328.6 269 61.3
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 8.3e-85 318.5 446 45.1
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.7e-83 313.5 402 46.0
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 3.9e-82 309.7 468 41.5
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 9.8e-78 295.0 471 40.3
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.7e-77 293.1 459 42.3
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.9e-76 290.8 303 56.4
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 7.1e-76 288.9 484 38.8
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.0e-74 285.0 432 41.9
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-73 281.6 466 42.5
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 6.8e-71 272.3 471 40.6
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 6.0e-67 259.2 466 36.9
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.0e-66 256.9 257 48.6
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 9.6e-65 251.9 422 40.3
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.3e-58 231.5 186 62.4
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-58 231.5 166 61.4
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.2e-51 208.4 357 41.5
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.6e-48 196.8 280 46.1
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.2e-48 196.1 174 54.0
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.4e-47 194.1 171 56.7
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 5.3e-47 193.0 155 58.7
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.0e-38 164.5 110 68.2
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.2e-30 138.7 256 41.0
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 7.6e-30 136.0 253 36.8
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 7.6e-30 136.0 94 70.2
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.9e-25 121.3 232 38.4
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.3e-25 120.6 114 56.1
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 7.7e-22 109.4 146 40.4
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 7.2e-20 102.8 232 35.3
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 6.9e-15 86.3 65 58.5
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 6.9e-15 86.3 65 58.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-13 82.0 55 76.4
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-13 82.0 55 76.4
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-12 78.2 82 48.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.9e-10 70.5 49 71.4
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 5.1e-10 70.1 257 25.7
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 3.3e-09 67.4 69 53.6
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 3.3e-09 67.4 69 53.6
Zm00001eb267410 Zea mays HOM05D000255 ORTHO05D000935 7.0e-07 59.7 161 26.7
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.2e-06 58.9 98 40.8


User provided reference genes

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