Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 0.0e+00 1107.4 573 100.0
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 7.7e-226 787.3 627 67.5
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.7e-209 733.0 624 64.4
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 3.9e-209 731.9 625 64.5
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 1.6e-207 726.5 627 64.8
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.9e-201 705.3 634 62.8
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 5.0e-201 704.9 613 63.3
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.6e-199 699.9 612 63.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.6e-199 699.9 624 63.1
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 2.1e-199 699.5 621 61.5
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 2.8e-199 699.1 624 63.1
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.6e-199 698.7 624 63.0
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.8e-198 696.4 627 62.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.5e-197 693.3 620 62.3
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 2.6e-197 692.6 592 62.7
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 4.4e-197 691.8 625 61.4
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.1e-195 687.2 618 62.1
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 9.2e-195 684.1 619 60.7
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.5e-194 682.2 624 61.2
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 7.8e-194 681.0 612 60.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.0e-193 680.6 674 57.7
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 3.0e-193 679.1 597 63.1
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 3.9e-193 678.7 623 59.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.9e-193 678.7 622 61.6
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 7.3e-192 674.5 616 60.2
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 7.3e-192 674.5 610 62.5
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 6.2e-191 671.4 610 60.7
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.1e-190 670.6 608 59.7
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 5.2e-190 668.3 618 62.0
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.7e-188 663.3 608 60.5
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.9e-188 662.5 614 60.4
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 6.4e-188 661.4 625 59.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 2.4e-187 659.4 585 61.4
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 8.7e-185 651.0 608 59.7
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.3e-184 647.9 624 57.2
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.2e-183 647.1 597 58.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.1e-182 644.0 607 59.3
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.8e-182 643.3 602 57.8
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.1e-182 642.5 665 57.6
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 6.9e-182 641.3 594 59.4
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 9.0e-182 641.0 593 59.2
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 9.0e-182 641.0 600 59.0
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.6e-181 639.4 633 55.8
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 7.6e-181 637.9 623 57.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.7e-180 636.7 621 59.6
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.2e-180 636.3 612 56.9
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.2e-180 636.3 599 59.1
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 6.4e-180 634.8 637 56.4
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.9e-179 633.3 565 61.9
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.9e-179 633.3 624 56.4
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 2.4e-179 632.9 586 59.9
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.2e-178 630.6 590 58.1
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 1.2e-178 630.6 603 56.2
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.7e-178 629.4 589 59.4
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.5e-178 629.0 589 58.2
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 4.6e-178 628.6 612 56.0
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 6.0e-178 628.2 599 59.4
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.0e-177 627.5 584 60.4
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-177 627.5 584 58.9
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.7e-177 626.7 577 58.4
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.3e-177 626.3 590 59.2
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 3.9e-177 625.5 602 57.8
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.9e-177 625.5 624 57.7
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.5e-176 622.9 612 57.4
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.5e-176 622.9 612 57.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 9.6e-176 620.9 606 57.9
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 9.6e-176 620.9 589 58.6
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.3e-175 620.5 622 55.1
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 2.1e-175 619.8 618 57.6
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 2.8e-175 619.4 578 58.5
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 6.2e-175 618.2 578 57.6
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.1e-174 617.5 599 58.1
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 2.4e-174 616.3 600 57.7
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.5e-173 613.6 601 57.2
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.7e-172 610.1 598 56.5
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 6.4e-172 608.2 590 57.8
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 8.4e-172 607.8 599 56.6
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 8.4e-172 607.8 590 58.0
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 2.4e-171 606.3 580 58.3
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.4e-171 606.3 581 60.6
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 3.2e-171 605.9 570 58.8
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 3.2e-171 605.9 571 58.7
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 4.2e-171 605.5 586 57.3
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 4.2e-171 605.5 546 61.2
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.6e-170 603.6 604 56.0
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 3.5e-170 602.4 578 57.1
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 7.4e-168 594.7 621 55.9
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.6e-167 593.6 581 57.1
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.1e-167 593.2 628 54.3
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 2.0e-165 586.6 607 54.5
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 9.3e-163 577.8 594 56.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.6e-162 577.0 609 53.2
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 6.0e-162 575.1 614 53.6
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.3e-159 567.4 596 52.9
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 4.8e-159 565.5 606 54.0
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 2.4e-158 563.1 624 52.2
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.3e-156 557.4 599 54.4
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 2.2e-156 556.6 635 52.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.2e-156 556.6 587 57.9
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 3.9e-153 545.8 637 50.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 6.3e-151 538.5 590 53.7
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.0e-149 533.5 575 54.1
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.5e-147 526.6 470 63.0
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 2.1e-146 523.5 511 56.6
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 6.1e-146 521.9 556 53.6
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.8e-142 510.4 593 53.1
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 6.9e-142 508.4 608 51.3
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.0e-140 504.6 502 56.2
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 5.2e-129 465.7 591 47.0
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.1e-126 456.1 459 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.2e-123 446.0 618 45.1
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 4.4e-120 436.0 594 45.3
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 7.7e-117 425.2 586 46.4
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 5.4e-94 349.4 538 41.4
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 8.6e-92 342.0 365 54.5
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-90 337.0 477 47.0
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 6.8e-89 332.4 376 52.7
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.6e-88 330.5 257 66.9
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 3.5e-77 293.5 361 47.9
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.2e-72 278.5 334 49.7
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 7.6e-72 275.8 293 54.3
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 7.1e-70 269.2 303 52.1
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 2.1e-61 241.1 312 43.3
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 7.8e-61 239.2 298 46.3
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 9.6e-59 232.3 231 55.0
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.9e-52 210.3 154 70.8
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 4.3e-51 206.8 118 87.3
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 7.4e-51 206.1 181 60.2
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.6e-50 204.9 189 59.3
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.6e-45 188.3 226 45.1
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.1e-43 182.2 118 74.6
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 7.4e-43 179.5 155 61.3
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 4.8e-42 176.8 173 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.4e-39 166.0 162 57.4
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 8.4e-39 166.0 173 49.7
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.1e-38 165.6 532 27.3
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.1e-38 162.9 148 59.5
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 6.0e-37 159.8 176 51.1
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 8.7e-36 156.0 101 73.3
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 4.3e-35 153.7 129 61.2
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 4.3e-35 153.7 122 63.1
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 2.2e-34 151.4 129 64.3
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.2e-31 141.4 188 48.4
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.4e-28 132.1 248 37.1
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.4e-28 132.1 124 60.5
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.5e-27 127.9 220 36.4
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 5.7e-27 126.7 113 64.6
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 5.3e-25 120.2 165 46.1
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.0e-24 118.2 87 70.1
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.0e-23 115.9 65 81.5
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.9e-22 111.7 195 37.9
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 3.2e-22 110.9 106 52.8
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 5.5e-22 110.2 171 41.5
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.0e-19 101.7 70 70.0
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.6e-19 101.3 74 71.6
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.3e-17 93.6 77 67.5
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.7e-15 88.6 76 63.2
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 3.8e-15 87.4 69 66.7
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.4e-12 79.0 112 41.1
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.8e-12 78.6 127 39.4
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.0e-12 77.8 123 39.0
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.5e-11 75.5 94 51.1
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.4e-09 68.2 64 56.2
Nn2g12770 Nelumbo nucifera HOM05D003525 ORTHO05D019487 7.2e-06 56.6 33 84.8
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 7.2e-06 56.6 49 55.1


User provided reference genes

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