Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 5.7e-101 370.9 188 100.0
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.6e-66 256.5 186 70.4
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 2.0e-58 229.6 182 61.5
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 3.8e-57 225.3 181 66.3
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 8.6e-57 224.2 181 65.2
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 1.5e-56 223.4 180 61.7
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 2.5e-56 222.6 182 62.6
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 7.3e-56 221.1 181 60.2
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 9.5e-56 220.7 185 61.6
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 3.6e-55 218.8 185 58.9
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 1.0e-54 217.2 185 62.2
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.0e-54 217.2 185 63.2
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 1.4e-54 216.9 185 63.2
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.8e-54 216.5 173 60.1
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 3.0e-54 215.7 170 65.9
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 8.9e-54 214.2 185 63.2
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 1.5e-53 213.4 168 64.3
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 2.6e-53 212.6 173 60.1
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 5.7e-53 211.5 176 61.9
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.9e-52 209.1 180 59.4
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 6.4e-52 208.0 173 61.3
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 8.3e-52 207.6 180 61.1
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 1.1e-51 207.2 179 60.3
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 1.4e-51 206.8 179 62.0
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 1.4e-51 206.8 190 55.3
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 4.1e-51 205.3 175 59.4
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 4.1e-51 205.3 175 59.4
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 7.0e-51 204.5 179 60.3
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 9.2e-51 204.1 180 57.8
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 9.2e-51 204.1 179 58.7
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 1.2e-50 203.8 173 61.8
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 2.0e-50 203.0 184 58.2
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 3.5e-50 202.2 184 58.7
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 1.7e-49 199.9 179 60.9
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 2.3e-49 199.5 179 57.0
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 3.0e-49 199.1 180 55.0
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 3.9e-49 198.7 185 57.3
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 3.9e-49 198.7 174 60.3
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 6.6e-49 198.0 179 55.9
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 8.6e-49 197.6 176 59.1
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 8.6e-49 197.6 186 55.9
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 1.9e-48 196.4 178 59.0
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 2.5e-48 196.1 179 54.7
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.2e-47 193.7 221 52.0
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 1.2e-47 193.7 180 56.7
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 1.2e-47 193.7 182 57.1
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 1.6e-47 193.4 197 52.8
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 3.6e-47 192.2 177 57.1
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 3.6e-47 192.2 177 57.1
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 6.2e-47 191.4 201 50.2
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 6.2e-47 191.4 180 57.2
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 1.1e-46 190.7 179 58.7
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 1.1e-46 190.7 170 58.8
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 4.0e-46 188.7 181 49.7
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 4.0e-46 188.7 179 57.0
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 2.0e-45 186.4 183 53.6
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 2.6e-45 186.0 180 51.1
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 4.4e-45 185.3 176 54.5
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 2.9e-44 182.6 191 52.4
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 3.7e-44 182.2 174 54.6
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 4.9e-44 181.8 191 50.8
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 1.9e-43 179.9 191 53.4
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 4.1e-43 178.7 182 54.4
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 5.4e-43 178.3 183 53.6
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 7.0e-43 177.9 172 55.8
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 3.5e-42 175.6 180 51.7
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 7.8e-42 174.5 191 51.3
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 1.3e-41 173.7 170 55.9
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 2.3e-41 172.9 180 53.9
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 3.0e-41 172.6 188 51.6
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 1.1e-40 170.6 170 55.9
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 7.3e-40 167.9 193 49.7
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 9.5e-40 167.5 191 49.7
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 9.5e-40 167.5 191 49.7
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 9.5e-40 167.5 166 54.8
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.6e-39 166.8 152 61.8
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 1.6e-39 166.8 166 53.0
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.8e-39 166.0 160 56.2
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 4.7e-39 165.2 192 50.0
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.4e-38 163.7 182 49.5
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 3.1e-38 162.5 188 47.9
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 3.1e-38 162.5 188 47.9
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 4.0e-38 162.2 182 48.9
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 2.0e-37 159.8 168 54.8
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 4.4e-37 158.7 167 47.9
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 7.5e-37 157.9 184 47.3
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 9.9e-37 157.5 153 56.2
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 2.2e-36 156.4 177 50.3
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 2.9e-36 156.0 119 64.7
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 3.5e-34 149.1 190 49.5
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 3.5e-34 149.1 185 46.5
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 6.0e-34 148.3 133 57.9
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 2.3e-33 146.4 175 48.6
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 1.5e-32 143.7 84 78.6
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 2.5e-32 142.9 180 46.1
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 4.3e-32 142.1 110 66.4
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 5.6e-32 141.7 159 50.3
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 6.2e-31 138.3 134 52.2
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 8.1e-31 137.9 168 52.4
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 1.4e-30 137.1 222 40.1
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 1.4e-30 137.1 100 68.0
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 5.2e-30 135.2 189 43.4
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 6.8e-30 134.8 188 44.7
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 9.9e-29 131.0 79 81.0
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 3.8e-28 129.0 87 71.3
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.1e-27 127.5 148 45.9
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 7.1e-27 124.8 208 40.9
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 7.1e-27 124.8 208 40.9
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 7.1e-27 124.8 180 41.7
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 1.6e-26 123.6 162 45.7
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 2.3e-25 119.8 184 39.1
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 2.4e-22 109.8 133 45.9
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 4.2e-19 99.0 128 43.8
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.7e-18 96.3 71 60.6
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 8.1e-15 84.7 143 39.9
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 6.9e-14 81.6 72 56.9
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 1.2e-13 80.9 84 52.4
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.5e-13 80.5 87 51.7
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 5.8e-13 78.6 136 34.6
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 5.6e-08 62.0 102 39.2


User provided reference genes

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