Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.2e-45 186.0 84 100.0
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 7.3e-24 113.6 87 64.4
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.1e-22 109.8 77 63.6
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 3.1e-22 108.2 89 57.3
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 6.8e-22 107.1 81 64.2
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 4.4e-21 104.4 87 60.9
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.9e-19 99.0 80 56.2
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 3.2e-19 98.2 86 59.3
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 2.7e-18 95.1 81 56.8
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 7.8e-18 93.6 72 66.7
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 2.3e-17 92.0 70 61.4
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 3.0e-17 91.7 76 55.3
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 8.6e-17 90.1 87 52.9
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 1.1e-16 89.7 73 61.6
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 1.5e-16 89.4 86 55.8
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 1.9e-16 89.0 82 54.9
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 1.9e-16 89.0 82 54.9
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 1.9e-16 89.0 82 54.9
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 2.5e-16 88.6 87 54.0
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 2.5e-16 88.6 76 53.9
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.3e-16 88.2 82 51.2
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 3.3e-16 88.2 78 60.3
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 7.3e-16 87.0 82 53.7
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 7.3e-16 87.0 82 53.7
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.2e-15 86.3 80 51.2
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 1.2e-15 86.3 87 52.9
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 2.8e-15 85.1 82 52.4
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 6.2e-15 84.0 80 47.5
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 8.1e-15 83.6 86 47.7
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 4.0e-14 81.3 78 51.3
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 4.0e-14 81.3 89 49.4
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 5.2e-14 80.9 66 59.1
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 8.9e-14 80.1 61 59.0
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 8.9e-14 80.1 73 50.7
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 8.9e-14 80.1 71 54.9
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 8.9e-14 80.1 71 54.9
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.5e-13 79.3 64 56.2
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.5e-13 79.3 87 51.7
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.0e-13 79.0 81 50.6
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.0e-13 79.0 90 46.7
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 2.6e-13 78.6 81 50.6
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 3.4e-13 78.2 53 60.4
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 4.4e-13 77.8 64 60.9
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 5.8e-13 77.4 87 49.4
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 5.8e-13 77.4 89 50.6
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 5.8e-13 77.4 67 56.7
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 5.8e-13 77.4 70 55.7
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 7.6e-13 77.0 83 47.0
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 7.6e-13 77.0 83 47.0
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 7.6e-13 77.0 64 50.0
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 9.9e-13 76.6 81 49.4
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 2.2e-12 75.5 82 51.2
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 3.8e-12 74.7 72 47.2
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 3.8e-12 74.7 78 47.4
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 6.4e-12 73.9 57 57.9
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 6.4e-12 73.9 67 50.7
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.1e-11 73.2 83 49.4
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.4e-11 72.8 83 49.4
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.4e-11 72.8 64 57.8
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 1.4e-11 72.8 59 57.6
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.4e-11 72.8 84 48.8
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.9e-11 72.4 56 53.6
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.9e-11 72.4 76 51.3
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.9e-11 72.4 76 51.3
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 1.6e-10 69.3 87 47.1
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.6e-10 69.3 58 58.6
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.6e-10 69.3 58 58.6
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.6e-10 69.3 58 58.6
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-10 69.3 67 50.7
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-10 69.3 67 50.7
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-10 69.3 67 50.7
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-10 69.3 67 50.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.1e-10 68.9 67 49.3
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 2.1e-10 68.9 63 52.4
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 3.5e-10 68.2 66 53.0
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 6.0e-10 67.4 83 43.4
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.5e-08 62.8 61 52.5
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 3.3e-08 61.6 69 44.9
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 5.6e-08 60.8 75 42.7
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 2.8e-07 58.5 52 51.9
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 3.6e-07 58.2 84 39.3
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 4.0e-06 54.7 72 45.8


User provided reference genes

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