Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.5e-167 590.9 297 100.0
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.9e-87 326.6 298 61.1
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 8.2e-78 294.7 296 57.1
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 3.2e-66 256.1 304 53.0
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 9.4e-66 254.6 288 52.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.3e-64 250.0 283 53.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.5e-63 247.3 300 51.7
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.5e-63 246.5 301 51.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 6.9e-61 238.4 270 53.3
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 5.9e-60 235.3 304 48.7
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 2.2e-59 233.4 297 49.8
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.5e-59 231.5 302 48.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.5e-58 229.9 305 49.2
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 5.5e-58 228.8 303 50.2
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.7e-57 226.5 303 48.8
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.8e-56 223.8 288 48.6
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 5.1e-56 222.2 300 47.7
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.1e-56 222.2 302 47.0
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 6.7e-56 221.9 298 48.7
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 6.7e-56 221.9 297 48.1
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 8.8e-56 221.5 291 49.5
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.8e-56 221.5 301 48.5
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.1e-55 221.1 284 49.6
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 4.4e-55 219.2 288 48.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.7e-54 217.2 295 47.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 2.8e-54 216.5 295 48.1
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 2.8e-54 216.5 308 48.4
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 3.7e-54 216.1 300 48.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.4e-53 214.2 301 47.2
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.4e-53 214.2 301 47.2
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.4e-53 214.2 295 47.5
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.8e-53 213.8 295 46.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.1e-53 213.0 299 47.2
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.1e-53 212.6 300 46.7
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 9.1e-53 211.5 292 45.9
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.0e-52 210.3 300 45.7
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 4.5e-52 209.1 303 46.2
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.9e-51 206.5 270 48.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 6.5e-51 205.3 298 45.6
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 6.5e-51 205.3 273 48.4
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.6e-49 199.5 275 46.9
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 6.1e-49 198.7 296 45.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.8e-48 197.2 283 44.9
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 3.0e-48 196.4 279 47.3
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.7e-47 192.2 265 47.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.4e-47 191.8 298 43.6
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.7e-46 190.7 292 42.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.3e-46 188.7 283 44.9
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.1e-45 188.0 304 44.4
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.3e-45 185.7 291 41.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.1e-45 184.9 296 44.6
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.6e-44 183.3 288 41.7
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.5e-44 183.0 291 44.0
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 7.7e-44 181.8 269 45.7
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.7e-43 180.6 298 41.9
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.2e-43 180.3 254 46.1
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.2e-43 180.3 296 43.2
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.5e-42 177.6 281 42.7
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.5e-42 177.6 298 41.3
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.5e-42 176.8 305 39.3
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 3.2e-42 176.4 296 37.5
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.4e-42 174.9 267 43.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.1e-41 173.7 287 42.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.7e-41 172.6 280 41.1
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 3.0e-40 169.9 258 46.9
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.6e-39 166.8 261 44.4
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.6e-39 166.8 280 37.5
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 5.7e-39 165.6 279 37.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.3e-38 164.5 293 39.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 2.2e-38 163.7 297 38.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.8e-38 163.3 284 41.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 8.3e-38 161.8 296 36.1
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 8.3e-38 161.8 303 36.3
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.4e-37 161.0 286 42.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 5.3e-37 159.1 279 43.0
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.5e-36 156.4 296 40.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.9e-36 155.6 282 39.4
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.3e-35 154.5 279 38.7
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.1e-34 151.4 300 37.3
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.2e-34 149.8 300 37.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 9.4e-34 148.3 299 35.5
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.6e-33 147.5 275 35.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.1e-33 147.1 301 37.5
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 4.7e-33 146.0 144 59.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 6.1e-33 145.6 297 38.7
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 8.0e-33 145.2 266 41.4
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.0e-32 144.8 213 46.0
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.0e-32 144.8 293 37.5
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.8e-32 144.1 262 37.0
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 4.0e-32 142.9 280 39.6
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 4.0e-32 142.9 290 37.6
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.8e-32 141.7 280 35.4
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-31 140.6 248 41.9
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.6e-31 140.2 267 39.7
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.7e-30 136.3 298 36.9
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.3e-30 135.6 321 36.8
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.1e-29 134.8 268 38.1
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.1e-29 134.8 275 35.3
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.8e-29 134.0 286 36.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 3.1e-29 133.3 252 38.5
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.7e-28 130.2 305 36.1
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.7e-27 127.5 281 37.7
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.7e-27 127.5 141 52.5
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 8.6e-27 125.2 267 37.8
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-26 124.4 215 41.9
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.9e-26 124.0 296 33.4
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.3e-26 123.2 274 35.8
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-25 120.9 263 36.1
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.1e-25 120.6 239 37.2
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.7e-25 119.4 121 55.4
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 6.1e-25 119.0 237 37.6
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.8e-24 117.5 289 35.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.8e-24 117.5 307 34.2
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.9e-24 115.2 255 36.9
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-23 114.8 250 37.6
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.5e-23 114.4 375 29.9
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-23 114.4 270 34.8
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.0e-23 114.0 297 30.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.4e-23 112.8 270 35.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 7.5e-23 112.1 293 31.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 7.5e-23 112.1 277 33.2
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.3e-22 111.3 280 36.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.2e-22 110.5 205 40.0
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.8e-22 110.2 117 54.7
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 4.5e-20 102.8 193 40.9
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 5.9e-20 102.4 276 32.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.3e-19 101.3 292 29.5
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.7e-19 100.9 297 29.3
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.3e-19 100.5 115 47.8
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.6e-19 99.0 91 57.1
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 6.6e-19 99.0 151 42.4
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.6e-19 98.6 118 47.5
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.6e-19 98.6 128 46.9
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 8.6e-19 98.6 302 31.1
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.5e-18 97.8 135 44.4
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.9e-18 97.4 151 43.0
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 2.5e-18 97.1 273 30.8
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 2.5e-18 97.1 327 28.1
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 4.3e-18 96.3 128 46.1
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.3e-18 96.3 128 46.1
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.3e-18 96.3 128 46.1
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.3e-18 96.3 128 46.1
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 5.6e-18 95.9 268 31.3
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.4e-16 91.3 206 35.9
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.8e-16 90.9 252 33.3
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.2e-16 89.4 273 30.0
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 6.8e-16 89.0 127 43.3
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 6.8e-16 89.0 268 30.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.6e-15 87.0 86 48.8
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 3.4e-15 86.7 85 50.6
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.3e-14 84.7 203 34.0
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.2e-14 84.0 233 33.0
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.9e-14 83.6 180 37.8
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.1e-13 81.6 194 32.5
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.0e-12 77.4 187 33.2
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 2.0e-12 77.4 162 34.6
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 6.0e-12 75.9 172 33.1
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.0e-11 75.1 102 42.2
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 1.0e-11 75.1 136 34.6
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.3e-11 74.7 69 53.6
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.7e-11 74.3 96 40.6
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.7e-11 74.3 99 45.5
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.3e-11 73.9 92 41.3
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.0e-11 73.6 69 49.3
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 3.9e-11 73.2 89 43.8
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 2.5e-10 70.5 102 38.2
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 2.5e-10 70.5 83 49.4
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.2e-09 68.2 72 50.0
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-09 68.2 65 52.3
ATR0174G047 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.6e-09 67.8 143 39.2
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 8.0e-09 65.5 72 47.2
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 3.1e-08 63.5 150 31.3
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.5e-07 61.2 71 43.7
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 2.6e-07 60.5 67 49.3
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 2.6e-07 60.5 68 42.6
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 5.8e-07 59.3 67 49.3
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.7e-06 56.6 67 46.3


User provided reference genes

Program Settings