Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.5e-237 825.9 452 100.0
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.1e-139 500.7 448 58.0
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 4.8e-138 495.4 415 60.0
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 4.8e-138 495.4 415 60.0
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 6.1e-133 478.4 423 57.7
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 6.7e-132 474.9 423 57.9
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.5e-131 473.8 445 54.4
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 9.7e-131 471.1 422 56.6
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 5.9e-128 461.8 416 55.8
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 2.2e-127 459.9 419 57.5
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 5.0e-127 458.8 443 51.2
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 6.7e-124 448.4 450 52.9
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 1.1e-123 447.6 420 53.8
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.7e-122 443.7 425 53.4
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 2.2e-122 443.4 416 54.6
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 1.1e-121 441.0 433 52.9
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 1.8e-121 440.3 416 53.4
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 7.0e-121 438.3 417 52.8
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 7.7e-120 434.9 444 48.9
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.0e-119 434.5 444 48.6
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 1.3e-119 434.1 417 53.2
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.9e-118 430.3 444 49.3
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.5e-118 429.9 444 49.1
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 4.2e-118 429.1 417 53.0
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 3.9e-116 422.5 431 50.8
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 5.2e-116 422.2 416 59.1
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 1.1e-115 421.0 416 51.2
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 3.3e-115 419.5 416 52.4
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 9.7e-115 417.9 418 52.9
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 9.7e-115 417.9 416 50.0
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 1.4e-113 414.1 420 60.2
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 1.8e-113 413.7 416 50.5
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 1.8e-113 413.7 441 48.1
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 2.4e-113 413.3 424 51.2
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 3.1e-113 412.9 416 51.0
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 4.1e-113 412.5 416 50.2
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 7.0e-113 411.8 416 51.4
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 4.5e-112 409.1 416 49.8
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 4.5e-112 409.1 416 49.8
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 7.7e-112 408.3 416 50.0
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 7.7e-112 408.3 416 50.0
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 1.0e-111 407.9 421 57.0
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 1.3e-111 407.5 417 50.8
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 1.3e-111 407.5 422 55.7
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 1.9e-110 403.7 423 47.5
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 3.2e-110 402.9 423 50.8
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 4.2e-110 402.5 426 48.8
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 4.2e-110 402.5 416 50.2
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 9.4e-110 401.4 414 58.7
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 1.6e-109 400.6 417 49.6
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 1.4e-108 397.5 420 47.6
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 1.8e-108 397.1 419 49.6
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 3.3e-107 392.9 417 55.9
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.7e-106 390.6 425 49.6
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 4.1e-105 386.0 422 48.8
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 5.3e-105 385.6 425 50.6
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 7.0e-105 385.2 415 48.4
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 9.1e-105 384.8 417 48.0
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 1.6e-104 384.0 417 47.7
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 5.9e-104 382.1 416 54.8
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 5.9e-104 382.1 418 46.4
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.0e-103 381.3 416 50.5
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 1.5e-102 377.5 445 45.8
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 5.5e-102 375.6 416 47.8
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 5.5e-102 375.6 423 47.8
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 2.1e-101 373.6 419 48.2
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 3.0e-100 369.8 416 51.4
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.0e-100 369.4 236 79.7
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 2.8e-98 363.2 412 51.0
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 1.2e-96 357.8 419 45.1
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 2.7e-96 356.7 424 44.6
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 2.9e-95 353.2 416 45.0
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.0e-95 352.4 353 48.4
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 1.1e-94 351.3 425 44.2
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 3.3e-94 349.7 416 51.9
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.3e-92 343.6 419 50.6
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 9.8e-91 338.2 413 50.6
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 1.3e-90 337.8 416 43.0
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 2.8e-90 336.7 425 44.0
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 6.3e-90 335.5 419 50.6
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 6.3e-90 335.5 418 43.5
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 1.1e-89 334.7 417 44.8
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 1.1e-89 334.7 419 50.6
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 1.8e-89 334.0 419 50.1
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 5.4e-89 332.4 416 49.3
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 7.8e-88 328.6 418 49.3
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.3e-87 327.8 418 48.8
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 1.2e-85 321.2 355 48.2
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 1.4e-81 307.8 358 46.1
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 1.7e-74 284.3 437 42.1
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 2.9e-74 283.5 419 43.7
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 6.4e-74 282.3 321 44.9
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.4e-73 281.2 160 88.1
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.0e-67 260.8 415 38.3
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 4.3e-62 243.0 298 48.7
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.0e-59 234.2 245 47.3
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 9.2e-57 225.3 403 34.0
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 2.7e-56 223.8 217 52.1
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 7.8e-56 222.2 298 40.9
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 1.4e-52 211.5 410 33.4
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 6.4e-50 202.6 160 68.8
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 4.8e-45 186.4 165 51.5
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 4.8e-37 159.8 211 46.0
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 4.6e-32 143.3 420 28.1
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.8e-29 134.0 145 44.8
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 1.4e-28 131.7 419 25.1
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.0e-28 130.2 170 39.4
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 5.3e-28 129.8 126 61.9
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 2.2e-26 124.4 176 39.8
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 3.7e-21 107.1 139 42.4
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-20 102.4 124 42.7
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-20 102.4 124 42.7
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 5.0e-18 96.7 135 42.2
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 8.5e-18 95.9 143 38.5
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 4.6e-16 90.1 120 39.2
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 4.6e-16 90.1 89 47.2
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 9.7e-14 82.4 123 38.2
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 3.7e-13 80.5 144 34.7
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 4.5e-11 73.6 96 39.6
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 3.8e-10 70.5 121 33.9
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 1.9e-09 68.2 161 29.2
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.2e-09 67.4 58 50.0
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 7.2e-09 66.2 104 33.7
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 1.2e-08 65.5 98 35.7
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 2.1e-08 64.7 91 34.1
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 2.7e-08 64.3 100 36.0
SMO271G0164 Selaginella moellendorffii HOM05D004079 ORTHO05D005437 4.7e-08 63.5 103 35.0
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 6.1e-08 63.2 100 34.0
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 1.4e-07 62.0 92 32.6
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 3.9e-07 60.5 95 33.7
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 3.9e-07 60.5 95 33.7
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 8.8e-07 59.3 93 37.6
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 8.8e-07 59.3 95 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 1.5e-06 58.5 100 34.0
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 1.5e-06 58.5 95 30.5
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 2.0e-06 58.2 78 34.6
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 2.0e-06 58.2 95 30.5
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 2.0e-06 58.2 98 32.7
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 2.0e-06 58.2 95 30.5
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 3.3e-06 57.4 91 33.0
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.3e-06 57.4 100 30.0
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 4.4e-06 57.0 116 30.2
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 4.4e-06 57.0 95 29.5
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 4.4e-06 57.0 95 29.5
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 4.4e-06 57.0 95 29.5
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 4.4e-06 57.0 96 32.3
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 4.4e-06 57.0 155 25.2
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 7.4e-06 56.2 95 29.5
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 9.7e-06 55.8 98 30.6
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 9.7e-06 55.8 92 33.7
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 9.7e-06 55.8 95 29.5


User provided reference genes

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