Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.0e-134 481.1 244 100.0
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 6.5e-89 331.3 214 80.8
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.1e-59 234.2 149 79.2
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.5e-40 169.9 218 47.2
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.7e-34 149.8 215 44.2
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 4.0e-22 109.4 123 52.8
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.2e-21 107.8 209 35.4
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.2e-21 107.8 156 46.2
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.7e-20 104.0 205 37.6
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.2e-20 103.6 117 50.4
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 4.9e-20 102.4 237 34.6
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 4.9e-20 102.4 237 34.6
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.9e-19 100.5 189 36.5
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 2.4e-19 100.1 182 40.7
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.4e-19 100.1 157 42.0
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.2e-18 97.8 258 33.7
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 3.5e-18 96.3 194 36.1
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 4.6e-18 95.9 104 51.9
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.7e-17 94.0 104 54.8
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 3.9e-17 92.8 107 51.4
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 5.1e-17 92.4 190 40.0
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 2.5e-16 90.1 201 33.8
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.5e-16 90.1 104 50.0
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 7.3e-16 88.6 163 41.1
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 7.3e-16 88.6 130 45.4
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 7.3e-16 88.6 128 45.3
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-15 87.4 101 50.5
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.6e-15 87.4 101 50.5
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.6e-15 87.4 126 46.0
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.1e-15 87.0 108 50.0
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 2.8e-15 86.7 126 44.4
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.6e-15 86.3 128 44.5
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.6e-15 86.3 128 44.5
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 4.7e-15 85.9 104 50.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 4.7e-15 85.9 116 49.1
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 4.7e-15 85.9 210 32.9
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 6.2e-15 85.5 101 50.5
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.1e-14 84.7 102 52.0
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.1e-14 84.7 119 46.2
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.4e-14 84.3 86 55.8
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.8e-14 84.0 115 47.8
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.1e-14 83.2 115 46.1
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 3.1e-14 83.2 104 48.1
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 4.0e-14 82.8 228 33.3
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 5.2e-14 82.4 210 34.3
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 5.2e-14 82.4 126 43.7
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 8.9e-14 81.6 227 32.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.6e-13 80.1 199 34.2
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.4e-13 79.7 127 43.3
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 3.4e-13 79.7 108 47.2
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 5.8e-13 79.0 105 49.5
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 7.5e-13 78.6 203 33.0
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 7.5e-13 78.6 86 50.0
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.3e-12 77.8 105 50.5
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.3e-12 77.8 199 33.2
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.7e-12 77.4 104 47.1
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.2e-12 77.0 104 48.1
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 3.7e-12 76.3 104 47.1
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 3.7e-12 76.3 104 47.1
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 6.4e-12 75.5 104 46.2
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.1e-11 74.7 104 46.2
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.1e-11 74.7 187 32.1
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.1e-11 74.7 237 30.8
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.9e-11 73.9 119 41.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.9e-11 73.9 168 32.7
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.2e-11 73.2 207 29.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 3.2e-11 73.2 184 36.4
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 4.1e-11 72.8 103 47.6
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.4e-11 72.4 220 32.7
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 7.1e-11 72.0 116 41.4
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 7.1e-11 72.0 116 41.4
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.2e-10 71.2 178 32.0
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.2e-10 71.2 118 44.9
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.6e-10 70.9 182 29.7
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.6e-10 69.3 141 36.9
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 4.6e-10 69.3 199 31.2
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.3e-09 67.8 213 30.0
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.7e-09 67.4 151 36.4
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.7e-09 67.4 126 36.5
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.9e-09 66.2 88 51.1
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 6.6e-09 65.5 183 30.6
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.6e-09 65.5 206 28.2
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.6e-09 65.5 183 30.6
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 6.6e-09 65.5 88 50.0
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 8.6e-09 65.1 156 34.0
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.1e-08 64.7 107 40.2
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.9e-08 63.9 223 30.9
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.9e-08 63.9 108 42.6
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.9e-08 63.9 106 43.4
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 3.3e-08 63.2 109 43.1
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 3.3e-08 63.2 123 38.2
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.3e-08 62.8 133 34.6
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 4.3e-08 62.8 81 42.0
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 4.3e-08 62.8 81 42.0
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 4.3e-08 62.8 81 42.0
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 4.3e-08 62.8 150 32.7
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 4.3e-08 62.8 150 35.3
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 7.3e-08 62.0 170 35.3
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 7.3e-08 62.0 93 44.1
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 9.5e-08 61.6 139 33.1
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 1.2e-07 61.2 124 39.5
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.2e-07 61.2 224 28.6
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.2e-07 61.2 150 35.3
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-07 60.8 126 38.1
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-07 60.8 86 44.2
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.6e-07 60.8 128 35.9
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.6e-07 60.8 100 44.0
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 2.1e-07 60.5 104 42.3
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 2.8e-07 60.1 214 30.8
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.7e-07 59.3 77 45.5
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 4.7e-07 59.3 97 44.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 6.2e-07 58.9 100 43.0
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 8.1e-07 58.5 126 38.9
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.4e-06 57.8 126 38.9
Lsat_1_v5_gn_0_18160 Lactuca sativa HOM05D004628 ORTHO05D005166 2.4e-06 57.0 106 41.5
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 3.1e-06 56.6 82 42.7
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 4.0e-06 56.2 138 34.8
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 4.0e-06 56.2 107 42.1
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 8.9e-06 55.1 143 31.5
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 8.9e-06 55.1 80 45.0


User provided reference genes

Program Settings